Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06285 ATGGTGCTTGCAAGAACTGGTAAGATTGTTGATTGCTTTCAAGTACCAGGACATACTGTGCTGCCTATTTTCTATGATGTGAGCCCATCTGAGGTGCGAAAACAGAGTGAGCATTACGAAAAAGCCTTTGTGGAATATGAAGAACGATTCAAAGGAAATATAGAAAAGGTGCAAAGATGGAGGGGAGCCCTAACACAAGTAGCCGACATCTCTGGCTGGGATGTAAGGGACAAGCGACAATATGCAGAGATTAAAAAAATTATTAGAGAGGTAACATGCATATTGGGTCACAAATTTTCAACTCTACCGGGTGATATAGTTGGGATGCATTCACGAGTGGAAGAATTAGAAAAGCTCCTGCTTTTGGACTCAAATGATGATGTTCGAGTTGTAGGGATTTGTGGAATAGGAAAGACAACTCTTGTTACAATTTTGTATGATAGAATCTCTAGTCAATTTGATGCATCCTGTTTCATTGATGATGCAAATAAAATTTATGGAGACTATGGTCCAAGTGCACAAAAGCAACTTCTTAGTTACACACTAAATGATGAAAATCTTCACCTATCCAATCTTTCTATGACAACTCATTTCATGCGGACTAGGGTATGCCACAAAAAGGCCCCGCTAGTTCTTGATAATGTTGATGATGTGAAGCAACCTGACAAATTGGCTATGAAATGCGAATGGCTAGGTGTAGGAAGTAGAATTGTCATAATTTCTAGGGATGAGCATATCTTGAGAGAGTATGAAGTTTACAAAGTTCAACTTTTGAATTATTATAATGCTCTTCAATTGTTTAGTAGAAAAGCTTTCAAACGTGATTATATCTTGAGAAACTACATACATTTGACAGATGATGTACTATCATATGCTAACGGCCTTCCATTAGCAATTAAAGTATTGGGCTCATTTTTATTTGGTCGAGATGTTTCTGAATGGAGAAGTGCATTGGCTAGTTTGAGAGAAAACCCAAGAAAAGATATTATAGATGTGCTTCGAACTAGTTTCGATGCGCTGGAAAATATGGAAAAGGAAATATTTCTAGACATTGCTTGTTTCTTTTACGACAATGAGGAGGAATATGTGAAGAAAGTTCTAGATATTCGTGGATTTTATCCTGAAATTGGTATAAAAGTTCTCATTGATAAATCACTTATAACCAGCAAGAAGGGGATTATTCGTATGCATGACTTGTTGAAAGAGCTGGGCAAGAACATAGTCCGAGAAAAATCACCCAAAGAGCCAAGAAAGTGGACCAGGTTGTGGGACTATAAGGATATCAACAATGTTATGTTAGAAAATATGGCTCGGGAAAATCTTGAAGCCATAGTCATGCAAAAATATGTAGAAAAGATTCACGAAACAACAATGAGTGTTGATGCTTTATCAAAAATGAGTCACCTTAAGTTGCTTATACTTTGGAATGTGACCAATTTTTCAGGAAGCCTGAATTATCTTTCTAATGAATTAGGAATTCTTTCTTGGGATAAATATCCTTTTACTAGTTTACCATCAAGTTTTCAACCAAATAAACTTGTTGAATTGATCCTTCCTCATAGCAACATCAAGCAACTTTGGGAAGGCATAAATCCTCTACACAATTTGAGATGTATGGATCTCTCTCATTCAAAAAATCTTATTAAGATAATGGATTTTAGAGAGGTCCCAAATCTTGAGAAGCTAGATCTTGAAGGATGTATTAGCCTTGTGCGGATGGATGCATCCATTGGTACTCTAAGAAAGCTTGCAAGATTCAATTTGAAAAATTGTAAATATCTAGTTAGTATTTCATACAAAATTTTTTGTCTTCATTCTATTACACAAATAAATCTCTCTGGTTGTTCAAAATTACTAAATTATCTCATGTTAGAGAATTCAAGTCTTGCAGATCATTTGGAAAAGCATGATCTAAATGAAGATACTATGGGATGCCAATCAACATCCTCCATTTTCAAAACTCTAATGTTGCCTTTCCATTTTTTCTATTCTCGAAAACATGAAGACTCAATTGGTTTATTAATGCTTTCTTTCTCTCATTTCCCTTGTTTGTATGATCTTGACATAAGTTTTTGCAATCTACTTGAAATCCCTGATGCTATTGGGTGGTTACGTTCTTTAGCAAGGTTAAATTTGGGGGGAAACAACTTCATTACACTACCTTATAGCATCAAGGAACTTTATGAACACACATATTTGAACTTGGAGCACTGTAAGCAGTTGAAATATTTACCTGAACTCCCATCGAGAACTTTCTTTCCAGTAAGAAGTGAAACATGGCCAGGTAGATATCATACAGGATTGTATTTATTTGATTGCCCCAAATTGTGTGAGATTGAGCGCTATTATTGCATGGCATTTTCCTGGATGATACAACTCCTTAAGGGTTCTCTTAGGTCCTCTTTCACCGATGGCTGGATTGACATTGTTATTCCCGGAAGTCAAATTCCAAGATGGTTTGACAAACAAAATGTGGGTAGTTCAATAAGCATGGATCCCTTTTCAATTATGCATGATAAGAATTGGATCGGTGTTGCTTGTTGCTTAACATTCATGGCACATGATGATCGAACTAACATGAATGAATGA 2589 0.36 MVLARTGKIVDCFQVPGHTVLPIFYDVSPSEVRKQSEHYEKAFVEYEERFKGNIEKVQRWRGALTQVADISGWDVRDKRQYAEIKKIIREVTCILGHKFSTLPGDIVGMHSRVEELEKLLLLDSNDDVRVVGICGIGKTTLVTILYDRISSQFDASCFIDDANKIYGDYGPSAQKQLLSYTLNDENLHLSNLSMTTHFMRTRVCHKKAPLVLDNVDDVKQPDKLAMKCEWLGVGSRIVIISRDEHILREYEVYKVQLLNYYNALQLFSRKAFKRDYILRNYIHLTDDVLSYANGLPLAIKVLGSFLFGRDVSEWRSALASLRENPRKDIIDVLRTSFDALENMEKEIFLDIACFFYDNEEEYVKKVLDIRGFYPEIGIKVLIDKSLITSKKGIIRMHDLLKELGKNIVREKSPKEPRKWTRLWDYKDINNVMLENMARENLEAIVMQKYVEKIHETTMSVDALSKMSHLKLLILWNVTNFSGSLNYLSNELGILSWDKYPFTSLPSSFQPNKLVELILPHSNIKQLWEGINPLHNLRCMDLSHSKNLIKIMDFREVPNLEKLDLEGCISLVRMDASIGTLRKLARFNLKNCKYLVSISYKIFCLHSITQINLSGCSKLLNYLMLENSSLADHLEKHDLNEDTMGCQSTSSIFKTLMLPFHFFYSRKHEDSIGLLMLSFSHFPCLYDLDISFCNLLEIPDAIGWLRSLARLNLGGNNFITLPYSIKELYEHTYLNLEHCKQLKYLPELPSRTFFPVRSETWPGRYHTGLYLFDCPKLCEIERYYCMAFSWMIQLLKGSLRSSFTDGWIDIVIPGSQIPRWFDKQNVGSSISMDPFSIMHDKNWIGVACCLTFMAHDDRTNMNE. 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06285 862 Gene3D - 1 96 IPR035897 -
Seca4g06285 862 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 73 IPR035897 -
Seca4g06285 862 Pfam TIR domain 8 79 IPR000157 GO:0007165
Seca4g06285 862 SUPERFAMILY "Winged helix" DNA-binding domain 328 431 IPR036390 -
Seca4g06285 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 351 IPR027417 -
Seca4g06285 862 Gene3D - 258 341 IPR042197 -
Seca4g06285 862 PRINTS Disease resistance protein signature 127 142 - -
Seca4g06285 862 PRINTS Disease resistance protein signature 554 570 - -
Seca4g06285 862 PRINTS Disease resistance protein signature 292 306 - -
Seca4g06285 862 PRINTS Disease resistance protein signature 202 216 - -
Seca4g06285 862 Pfam NB-ARC domain 112 329 IPR002182 GO:0043531
Seca4g06285 862 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 622 IPR044974 GO:0006952
Seca4g06285 862 SUPERFAMILY L domain-like 463 799 - -
Seca4g06285 862 Pfam Leucine Rich Repeat 512 530 IPR011713 -
Seca4g06285 862 ProSiteProfiles TIR domain profile. 1 92 IPR000157 GO:0007165
Seca4g06285 862 Gene3D Ribonuclease Inhibitor 664 796 IPR032675 -
Seca4g06285 862 Gene3D Ribonuclease Inhibitor 451 639 IPR032675 -
Seca4g06285 862 Gene3D - 97 255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06285 Seca-Chr4 124459805 124468026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06285 107 744 WRKY Transcription Factor Family AT5G45050 31.471 1.70e-76 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06285 - - psat:127106907 1028.08