Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06276 ATGAAAACCAAGGGGAAAACAAACATCCCTCATAATGGCTATACTCTGATAGCCATTATAGGAATCAGGGATCCTGTGCGCCTTGGGGTTAGGCAAGTTGTTCAAACTTGTTTAGCAGCTAAGGCTATAGCTAAAGAACGTGGTATACTTACTGAGGATGGTGTAGCCATAGAAGGACCAACATTTTGTAACTTGTCTCCAGAGCAAATGAAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCCATGGGGATAGCTGGAACCAAGAAGCATGCTACCTTCTTCGACTTGAATCAAGATGGTCTTAACACACTTTCTTTCAGGCAGGGAGTATATGTATATATACTACCCATATTGCCAATTGTTGCCACGTGCACACATGGATTCTTCTATATGAGAAGGGACTCTGTTTTCAGGGTGAATCACTACCCTGCTTGCCCTGAACTTGCTGTGAATGGTGAGAATTTGATTGTGTTTGGAGAACACACAGACCCACAATCCATTTCTTTGTTGAGGTCCAATAACACTTCTGGTCTTCATATTTCTCTCAGAGATGGAAGCTGGATATCAGTCCCACCTGACCAGGCCATAGCTCTTTCTTCATCAATGTTGGTGATTCTCTACAGGTACCACACAATCATATCACAATAA 756 0.4299 MKTKGKTNIPHNGYTLIAIIGIRDPVRLGVRQVVQTCLAAKAIAKERGILTEDGVAIEGPTFCNLSPEQMKVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTKKHATFFDLNQDGLNTLSFRQGVYVYILPILPIVATCTHGFFYMRRDSVFRVNHYPACPELAVNGENLIVFGEHTDPQSISLLRSNNTSGLHISLRDGSWISVPPDQAIALSSSMLVILYRYHTIISQ. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06276 251 Pfam 2OG-Fe(II) oxygenase superfamily 170 231 IPR044861 -
Seca4g06276 251 Gene3D - 155 240 IPR027443 -
Seca4g06276 251 Gene3D - 26 123 IPR023214 -
Seca4g06276 251 PRINTS P-type cation-transporting ATPase superfamily signature 99 118 - -
Seca4g06276 251 PRINTS P-type cation-transporting ATPase superfamily signature 18 29 - -
Seca4g06276 251 SUPERFAMILY Clavaminate synthase-like 167 229 - -
Seca4g06276 251 SUPERFAMILY HAD-like 14 130 IPR036412 -
Seca4g06276 251 PANTHER CATION TRANSPORTING ATPASE 6 124 - -
Seca4g06276 251 Gene3D - 10 25 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06276 Seca-Chr4 124344426 124346346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06276 6 150 Primary Pumps ATPases AT3G57330 55.491 1.16e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06276 K01537 - gmx:100785768 183.341