Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06274 ATGGGTACGGTTCTTCTTCGTTGTCGTTCGTCGATCTCTCATAGCGAAATTCTCAATAACTATGCGTGTATTCGTGGTTGGATTTTTCTCTCTGATGGATTTTGGTCTTATTTTTCAACATGTATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCAGCAAACACCAAGTTATCAAGCAACAAGACAGTTAGGAGGATTCGTGTTAGAGGTGGCAATGTTAAATGGAGGGCATTGAGATTGGATACTAGAAATTACTCTTGGGGTAGTGAAGCAGTAACTCGCAAGAGACATTATTCTTCGAAGTCGTGCTGGTGA 375 0.4347 MGTVLLRCRSSISHSEILNNYACIRGWIFLSDGFWSYFSTCISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTRNYSWGSEAVTRKRHYSSKSCW. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06274 124 PANTHER 40S RIBOSOMAL PROTEIN S8 42 116 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca4g06274 124 NCBIfam ribosomal protein eS8 42 116 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca4g06274 124 Pfam Ribosomal protein S8e 44 115 IPR022309 -
Seca4g06274 124 ProSitePatterns Ribosomal protein S8e signature. 50 69 IPR018283 GO:0003735|GO:0005840|GO:0006412
Seca4g06274 124 Gene3D - 67 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06274 Seca-Chr4 124311869 124313153 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06274 42 115 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 93.243 4.99e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06274 K02995 - ini:109162318 141.354