Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06272 ATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGAAAGAAGAGAAATAGGTATGAGCTTGGTCGCCAGCCAGCAAACACCAAGTTATCAAGCAACAAGACAGTTAGGAGGATTCGTGTTAGAGTTGGCAATGTTAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCATGGGGTAGTGAAGCAGTAACTTGCAAGACTCGTATTCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACCTCGGTCAAGAGTGCTATTATCCAGGTTGATGCTGCTCCATTCAAACAGTGGTACTTGCATCACTATGGTGTTGATATTGGTAGAAAAAAGAAAGCAGCATCCAAGAAGGACTCCACAGAGGTGATTCATGATGCTTTGAGAAATTTTCTTTATATTTCAATTTCCACAGCATGA 444 0.4257 MHKRRATGGKKKAWRKKRNRYELGRQPANTKLSSNKTVRRIRVRVGNVKWRALRLDTGNYSWGSEAVTCKTRILDVVYNASNNELVRTQTSVKSAIIQVDAAPFKQWYLHHYGVDIGRKKKAASKKDSTEVIHDALRNFLYISISTA. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06272 147 Gene3D - 26 137 - -
Seca4g06272 147 FunFam 40S ribosomal protein S8 26 139 - -
Seca4g06272 147 Pfam Ribosomal protein S8e 2 105 IPR022309 -
Seca4g06272 147 PANTHER 40S RIBOSOMAL PROTEIN S8 1 128 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca4g06272 147 MobiDBLite consensus disorder prediction 1 29 - -
Seca4g06272 147 NCBIfam ribosomal protein eS8 2 102 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca4g06272 147 CDD Ribosomal_S8e_like 2 118 - -
Seca4g06272 147 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g06272 147 ProSitePatterns Ribosomal protein S8e signature. 4 24 IPR018283 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06272 Seca-Chr4 124306395 124307964 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06272 1 124 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 87.097 2.37e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06272 K02995 - cave:132189889 242.276