Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06256 ATGTCCATGTCCAATAACATACCACTTTTATCAGCTGTGGCCTCTTTTGCAGCCTCATTCATGCTGATTCGAAGCATTACCCATGAATTCATCCCTCATCAAGTCCTAAACTTTTTCCATTCAGGACTTCACAATCTTTCTCGCCATTTCTCTACCCAATTCACCATTGTCATTGAAGAATTCCAAGGGATGTCCAGAAACCAAGTTTTTGAGGCAGCAGAAGCCTATTTAGGCACTAAAGCCACTCTCTCAACTCAGAGAGTTAAAGCAAGCAAATCTGAGGATGATAAAAACCTTTCATTTGGTTTAGATAGAGATGAAGAAGTGAGTGATGAATTTGAAGGTGTTAGATTAACTTGGAAACTTATGTGTTTCCAAGTTGAGTCATCTCATAGACATACTCATGATATGAACATGTCTTCACAATCAGAACTAAGATACTATGAACTAAGCTTTCACAAGAAACACAAGGAGAAAATCTTCAATTCATATTTGCCATATGTTTTGGAGAGAGCCAAGGCTATTAAACAAGAAAACATGGCAGTGAAGCTTCACACAGTTGAATATGAGTACTGGTGTGGACAAGCTGTTAAATTTGATCATCCAATGAGTTTCAAGACTCTTGCAATTGATGCTGAGATTAAAAGGGAATTAGTGAATGATTTGGACAGGTTTATAAAAGGGAAGGAGTTCTATAGAAGAACTGGGAAAGCTTGGAAACGTGGTTACTTGTTGTATGGTCCTCCTGGAACTGGCAAATCTAGCTTAATTGCAGCCATTGCCAACTATCTCAACTATGATATCTATGACTTGGATCTCACAGGTGTACATGACAATAAGAGCTTAAAGAATCTTCTCCTTGGCATGTCTAACCGTTCCATACTTGTGATAGAGGATATTGACTGCACTATAAAGCTTCAGAACAGAGAAGAAGATAAGGAAGTGGAAGTGGATGATAATGGATACAATAAGGTGACACTTTCAGGACTTTTGAATGTTATAGATGGGCTTTGGTCATGCTGTGGAGAGGAACGCATCATTATTTTTACAACCAATCATAAAGAAAGGCTTGACCCTGCTCTGCTAAGGCCTGGCCGGATGGACATGCATATTCACTTGTCATACTGTACCTTTTCTGCTTTTGAGCAATTGGCTTTGAACTACCTTGGCATTTCTCAACACAAACTCTTTGAACAAATTGAAGGGCTTCTAAGAGAAGTCCAAGTGACTCCAGCAGAATTTGCAGGAGAGCTAATAAAGATTGCTGATGCTAGCGAATGCCTACAAGACCTTGTCAAATTCCTCCATGACAAGAAAATGCTCAAGGGCGAGACTGAAAGTGACCAGAATATCAAAGAGGATCATGAACTAGGTAGAGAAAAATTGTGA 1389 0.3924 MSMSNNIPLLSAVASFAASFMLIRSITHEFIPHQVLNFFHSGLHNLSRHFSTQFTIVIEEFQGMSRNQVFEAAEAYLGTKATLSTQRVKASKSEDDKNLSFGLDRDEEVSDEFEGVRLTWKLMCFQVESSHRHTHDMNMSSQSELRYYELSFHKKHKEKIFNSYLPYVLERAKAIKQENMAVKLHTVEYEYWCGQAVKFDHPMSFKTLAIDAEIKRELVNDLDRFIKGKEFYRRTGKAWKRGYLLYGPPGTGKSSLIAAIANYLNYDIYDLDLTGVHDNKSLKNLLLGMSNRSILVIEDIDCTIKLQNREEDKEVEVDDNGYNKVTLSGLLNVIDGLWSCCGEERIIIFTTNHKERLDPALLRPGRMDMHIHLSYCTFSAFEQLALNYLGISQHKLFEQIEGLLREVQVTPAEFAGELIKIADASECLQDLVKFLHDKKMLKGETESDQNIKEDHELGREKL. 463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06256 462 Pfam ATPase family associated with various cellular activities (AAA) 244 374 IPR003959 GO:0005524|GO:0016887
Seca4g06256 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 432 IPR027417 -
Seca4g06256 462 Gene3D - 372 442 - -
Seca4g06256 462 Pfam Domain associated at C-terminal with AAA 31 123 IPR025753 -
Seca4g06256 462 CDD RecA-like_BCS1 218 373 - -
Seca4g06256 462 SMART AAA_5 239 377 IPR003593 GO:0016887
Seca4g06256 462 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Seca4g06256 462 PANTHER BCS1 AAA-TYPE ATPASE 11 440 - -
Seca4g06256 462 Gene3D - 194 371 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g06256 Seca-Chr4 123936764 123939053 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06256 241 373 Calmodulin-binding Proteins AT3G56690 28.369 5.87e-11 63.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06256 K08900 - gmx:100778503 679.093