Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06252 ATGTCGCATTCGTCGGGAAAACCCGTTTCTGAAGTGGTCGGTTTAGACACTTTCACCGATCGGTTCCGAGACACGTTGAACTGTGAGGCTAACAAACCAGACTTCCGAGAACTCGATCTGGGTTCGCCCGTTTCGCCATTGCGGACCCGTGGACCCGCCGCGAGTAGCAGTTCTGGTTCCTCTGGATCAGTCTCTGCAGGGCGAAACGGGCAAAACCCGGTTCCAAAAAGATCCGATTCAGCAACCAACAACAATACCAACAACTCCGGCGAGCTTTCCGGCTCCAGTGAGAACAGCCCCACCGCCGCGGCGGAGAGCCAGCGATCCGCCGGGAATAATGCGCGGGGCTTCAAACCGGGTCACGTGAGATCCGATTCTGGATCCGCCCCGATGCCGTTAATCTATTCGGGTCAGACAGTGAACTCGCCAGCGCTTAATGTTCTTCCCACCGGAAACATTTGCCCCTCCGGTAGGATCATCAAGACCGGCATGTCGGCGAATCGGGGCTCCCGGAGCGACGTTCTCGGCTCCGGGACGGGGAACTACGGTCACGGCAGCATAATGCGCGGCGGTTCCGCCGCCGCTGCTAAAGGAGACACGGCGAATGTGAGATGCAGCATTGGCAATGATAAGAGAGGAGTGCAGAGTGTGGATCCAGAAGAGCTAAAGAGAGCAGGGAATGAGCATTATAAGAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGACCGTGCAATTGCGTTGTCGCCGGCCAGTGCCGCCTACCGGAGCAACCGTGCGGCGGCTCTGACTGGGTTAGGACGGCTGGCGGAGGCGGTGAGGGAATGTGAGGAGGCTGTTAGGTTAGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTCTGTTATCATGGGCTGCAACCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATTAGCAAATGTGCAGATTTCAGGAGGATAGGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTCCTCAGCTCTTTATTTGTAGAGCAGAAGCCCTTTTGAAGGTTCATCAAATTGATGATGCAGAATCAATTTTGTCACATGTTCCCAAATCAGAACCACATACAAATTCCTCTTCTCAAGCAAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTCAGAGCTCAGATTGAGATGGCATTAGGAAGGTGGGTTCAGGCACTATTAACCTTCATCGGAACCCTAAGATGGGAATGGTTTCTGTTGGAGAGTGAAAATGGATGA 1353 0.5225 MSHSSGKPVSEVVGLDTFTDRFRDTLNCEANKPDFRELDLGSPVSPLRTRGPAASSSSGSSGSVSAGRNGQNPVPKRSDSATNNNTNNSGELSGSSENSPTAAAESQRSAGNNARGFKPGHVRSDSGSAPMPLIYSGQTVNSPALNVLPTGNICPSGRIIKTGMSANRGSRSDVLGSGTGNYGHGSIMRGGSAAAAKGDTANVRCSIGNDKRGVQSVDPEELKRAGNEHYKKGHFADALSLYDRAIALSPASAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYHGLQPDPSEMQKLQMVEKHISKCADFRRIGDWKSVLREVDAAVAAGADSCPQLFICRAEALLKVHQIDDAESILSHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMALGRWVQALLTFIGTLRWEWFLLESENG. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06252 450 MobiDBLite consensus disorder prediction 49 113 - -
Seca4g06252 450 Gene3D Tetratricopeptide repeat domain 217 434 IPR011990 GO:0005515
Seca4g06252 450 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 431 IPR044534 -
Seca4g06252 450 MobiDBLite consensus disorder prediction 1 130 - -
Seca4g06252 450 SUPERFAMILY TPR-like 219 434 IPR011990 GO:0005515
Seca4g06252 450 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Seca4g06252 450 MobiDBLite consensus disorder prediction 22 36 - -
Seca4g06252 450 SMART tpr_5 363 396 IPR019734 GO:0005515
Seca4g06252 450 SMART tpr_5 219 252 IPR019734 GO:0005515
Seca4g06252 450 SMART tpr_5 253 286 IPR019734 GO:0005515
Seca4g06252 450 Pfam Tetratricopeptide repeat 225 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06252 Seca-Chr4 123914710 123918534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06252 213 310 U-box Gene Family AT3G07370 35.714 9.32e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06252 - - gmx:100795358 588.186