Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06248 ATGTTAGTCGGCAACAAAATAGAAGATTTATGCAATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGATCTTTTCTGGTACTGACATTTTTCAGTCTAGCCAGAGGTATCTTGTTTCTGGAGTTATCAACTTTGAACATGAATCTACTAAAACCACATTTAAATCATTTGGCTCTAGTAATGAAAACTCAGTCGTATTGCGTCCCTTGTCTTCAAGACTTACACTTCCTGAGGAGGAATTTAATGTAATTCCGCATTCCAAAGAGACTGCTCCGGGGTGCATGCCAGACAGTTCCATTTGTGAAGACCAGAATGATGAGGATGTAAATGTCAAGCGTATGAAATTTTCTCTGCATGAACCTCCTTGTAGTATATCTAATTCAGAAAATGTTGAAAGTCCATCAGGACTTTCAAAAGTAGTAGTTTCTAAGCTGTCTCATGCTGCTCCAGACTGTGATAGTGAACAAATTGCATTTCGATTAGTTGAATCATCTAAACATGGTGTGATATCTAGTTGCTATCTGTTGAAGCATAATATGTTACAGAATAAACAAGCTGCTAAGGATGATGTAGATGTTACAAATTGTAAATCAACTACAGCAGATGGGAATGTTGCTAAAGAGGTGTCTGTAAGTAAAGTGGTTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGCAGTTACTAGTCCACCAATTGCTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCAGAAGAGTTTCTATCTTCTAATATGGATATCTCGAATTCGTCCTCAAAGCTAGACAAAGAGGATCCTCGTGCTTTATTGCAGTTTCATATTGTGGAGTTGCTTAGGATGGCAGGGTGGTCTATTGAGAAGCGTCATCGACCTAGCAGGCGTTACATGGAATCAGTTTATAGGACACCAAAGGGAAAGCCTATTCGGGAATTTACAAAAGCATGGAGATTATGTGGTCAGCTTTTATCTGTTCAGAAATGCCATTTAATGAATGGAGATTGTAAGGAATGGACTGATATATGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAGCAAAGACACAGTCAGAGCCTGCTGCTATGTTGGCTCATCAATGGTGGCTTTTGGATCCTTTTGTTGTAGTTATATTTGTTGATAGAAAGATTGGTGCACTGAAAAAGGGAGAGGTAGTAAAAGCAACTTGGAGTTTAGTTTCTAATAAGTATAATATGGAATGTGCTCCCATTGATTCAGCTCAGGAGAATAATTCTGGTGCTCATTTTGATAAAAAACATGACCAAGCTTTTCCCTGCAATTCTTCTACAGCCACTGGAACTACACTAACTCCTTCTGTGATTAACTACCCTGCCTGTAATCAGAAATCTGATGGTAACCGGGAAAATAAGCATGTTGTACAACATAATCCCAACAGCATAGGAAATCAATGTGGGAAAATGTCTCTGAACAAAAGCAGTATGGATCTAGTTTCTTTACCTGGTTATGGATTGGATAGCACTGGTACCAAGTCAAGTGCTTCCCCTTTAGATATTCATACAAAAACTGGAAATTCAAACAAGGTACTTGGAGTGTCTAAAGTAAATGCTGTTCATCAAGCTAATTCCAAAAGCTGTGATAAACAGAGATCAGAAAATCATCTGAAAACAAATAAAAGAATCGATGGAGATGTGCCAATGGACATCTCAGAGAAAAATAATGCATATGGGGTAAGCCATGGCATGGTTCATTCTCACGATTCAGAGACTATTCAACAGGCTGAATGTAGTGAGGAAGAAGGCAGGAAAATCTCAATAGCTTCTTTATTCAGAAAAGACAACACATATTCTGCCACTAATGTTGCTTTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACCGAGTATGTTATCCCATGGTGACAAGCTGGGCTCAACTGTTACTGACCAGATGCAGTCACTGAATGGTGATTCATGTGACACTCAGTTAGGGTTGGAAGAGGTCCAGGATTACCTAGTTGACAATGCAGGAAAAAAAAGAAACCACAGGAAGTTATCATCTGTCAGTGCAATCCAGCAACATATTAGGAAAACAAACTACTCCATAACTGGAACAAAAATGTCCAATGGATGCCAAATTAAAGATGATGATCTATTAGTGTCGGCGATATTCAGGAATAAGGACTTAACTCCAAAGACAATCCGAGGTAATTCTAGAGCTAAATCCTGCAAATCAAGGGGATGGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAGCCCAATAAGGATGGCAAGAGGTATTTTCTTGGGGCAAGGACACTCTTATCCTGGTTGATTGAGAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGACGGTAGGGTCACCAAAGATGGCATTATTTGTAAGTGTTGTGGTAAGGTGCTTACACTATCAGAGTTCAAGTTTCATGCTGGGTATACACAGAGTCGCCCCTGCCTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACATTATGCCTCCTTCAAGCTTGGTCAGCAGAATACAAAGCCAGGAAAAGTCAGAATCAAGCCGTGCCTGTTGATGACAATGATAGAAATGATGACTCCTGTGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAACTGCACTTGTCGGATATGTGGAAATTTGGCCCTTGATAAGGAGGCTTCAGATGTGTATAATTCATTACAATGTTCACAGTGCGAACATAAATATCATGAGAAATGCCTGAGAGAAAGAGATAAACAAGAAGGGGTGGTTTCAGACACTTGGTTTTGTGGTCAGGGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAGGTGGGATTAGTTAATCAAGTAGCTGATGGCTTCTCATGGATGCTTCTTAGGTGCATCCATGATGACCAAAAGGTTCATTCTGCCCAGCGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTATCCGTTGCCCTTACGATCATGGAGGAATGTTTTTTGTCAATGTTGGATCCAAGAACAGGCATCCACATGATCCCCCAAGTTTTATACAACTGGGGGTCTGATTTTGCGCGTATGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTGAATGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGATGACATCGAAAAGCAAAGATTGAACAAAATCAACTTGATGGTTTTTCCTGGGACAGTGTTACTTGAAAAACCCTTGTACAGGAAGGAGAAGAGTGAAGGACTGTGTGATCAATCAACTTTAGCAACAGATGAATCAATCAAAGTAAGTATCTGTTCTGAAGGAATGGCCATAGCTGAATCATTGCCACAAGATGCTGGAAACATAACTACTGATGAAGTTGGTGCTAAGTCAGAATATGAACCTGTGGACGGCAAAAATCAACTAGACCAAAGGGCTGGCAGTGAAACCAGCAGAGATGATAATACTCAAGCTGTTTACGCTGCATTGGGAGCCAAAGAATCAACAGAAACAAGTAGCTGTGTCAGAGAAGAGAAGATCAGCCACTTGGTGGTATCTGGTGAATCAGAGGAATCTATTGAAGGAAGCATTCAGGAATTGAGGAAAAGCAACAAAATGCAAATGGCAAGTGAGTTGGTACAGCAATCTAGTGAGAACTGTTGTGCTAACAAAGATGGTACTGAATCAGGTGTAAAAATTATTGAGGGCAAGAATATCAAAACAGATGTTCAGGAAAATGCTTTGCATGGCCATTTTTCAAATATGTCCTGCAAAACATTTTCAAGCAGCAATTTTGACAGGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACACTTGCAAAGTCTGCAAGCTGA 4242 0.4043 MLVGNKIEDLCNDNFEGSNEERQIFTEIFSGTDIFQSSQRYLVSGVINFEHESTKTTFKSFGSSNENSVVLRPLSSRLTLPEEEFNVIPHSKETAPGCMPDSSICEDQNDEDVNVKRMKFSLHEPPCSISNSENVESPSGLSKVVVSKLSHAAPDCDSEQIAFRLVESSKHGVISSCYLLKHNMLQNKQAAKDDVDVTNCKSTTADGNVAKEVSVSKVVASPVSQESFANRLAVTSPPIAVVKKSGSPLNPEEMPEEFLSSNMDISNSSSKLDKEDPRALLQFHIVELLRMAGWSIEKRHRPSRRYMESVYRTPKGKPIREFTKAWRLCGQLLSVQKCHLMNGDCKEWTDICQFWSDLSSALINVEKAKTQSEPAAMLAHQWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSNKYNMECAPIDSAQENNSGAHFDKKHDQAFPCNSSTATGTTLTPSVINYPACNQKSDGNRENKHVVQHNPNSIGNQCGKMSLNKSSMDLVSLPGYGLDSTGTKSSASPLDIHTKTGNSNKVLGVSKVNAVHQANSKSCDKQRSENHLKTNKRIDGDVPMDISEKNNAYGVSHGMVHSHDSETIQQAECSEEEGRKISIASLFRKDNTYSATNVAFKKKMRRKCKRVSEIKPSMLSHGDKLGSTVTDQMQSLNGDSCDTQLGLEEVQDYLVDNAGKKRNHRKLSSVSAIQQHIRKTNYSITGTKMSNGCQIKDDDLLVSAIFRNKDLTPKTIRGNSRAKSCKSRGWRKLKSQKGRCRLLPRNPCNGGKPNKDGKRYFLGARTLLSWLIENGVISLNDVIQYRNPKDNSVTKDGRVTKDGIICKCCGKVLTLSEFKFHAGYTQSRPCLNLFMESGEPFTLCLLQAWSAEYKARKSQNQAVPVDDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLALDKEASDVYNSLQCSQCEHKYHEKCLRERDKQEGVVSDTWFCGQGCQEVYSGLQSQVGLVNQVADGFSWMLLRCIHDDQKVHSAQRFALKAVCNTKLSVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFARMNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVNAIEEMLISVKVEKLVIAAIPDLVETWTKGFGFVPVDDIEKQRLNKINLMVFPGTVLLEKPLYRKEKSEGLCDQSTLATDESIKVSICSEGMAIAESLPQDAGNITTDEVGAKSEYEPVDGKNQLDQRAGSETSRDDNTQAVYAALGAKESTETSSCVREEKISHLVVSGESEESIEGSIQELRKSNKMQMASELVQQSSENCCANKDGTESGVKIIEGKNIKTDVQENALHGHFSNMSCKTFSSSNFDRDSNIECSVMYDETAFFGTLAKSAS. 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06248 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 895 946 IPR013083 -
Seca4g06248 1413 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1055 1202 IPR000182 GO:0016747
Seca4g06248 1413 ProSiteProfiles Zinc finger PHD-type profile. 902 947 IPR019787 -
Seca4g06248 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 1003 IPR013083 -
Seca4g06248 1413 MobiDBLite consensus disorder prediction 1252 1276 - -
Seca4g06248 1413 Pfam Tify domain binding domain 827 877 IPR032308 -
Seca4g06248 1413 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1091 1178 IPR016181 -
Seca4g06248 1413 Pfam PHD-finger 905 946 IPR019787 -
Seca4g06248 1413 PANTHER PHD FINGER FAMILY PROTEIN 1 1346 - -
Seca4g06248 1413 Gene3D - 1078 1189 - -
Seca4g06248 1413 SMART PHD_3 946 1000 IPR001965 -
Seca4g06248 1413 SMART PHD_3 904 945 IPR001965 -
Seca4g06248 1413 CDD PHD1_AIRE 905 944 - -
Seca4g06248 1413 SUPERFAMILY FYVE/PHD zinc finger 891 946 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06248 Seca-Chr4 123696469 123706836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06248 1 409 PHD Transcription Factor Family AT3G14980 34.053 1.23e-48 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g06248 TDBD 9.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06248 - - lja:Lj3g3v1061160.1 2103.18