Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06245 ATGGGATCACCATTCAAGCCCATCTCATGCACCAGAAAAACCCCATATAGATTAGAAACCAAAAACTTATCATACAAATTGTGCAGCCAACTTGATGAATATAGAAGCCTTTGTTTTGGTTCAAATCCTAGGAGAGGTGCAAAGTTCATTTTGAAGGATGTAAATTGTGAGGCAAGGTCAGGGGAACTCACAGCTATTGCCGGTCCTAGTGGAGCTGGAAAAACCACACTGCTTGAAATTCTTGCAGGGAGAATACCCCCATGTAAAGTGTCTGGGCAAGTGCTTGTCAATCATAGGCCTATGGATGTGCACAGATTCAGAAGAACATCTGGGTATGTCACACAGGAAGATGCTTTGTTCCCATCACTTACAGTTAGAGAGACATTCATGTATAGTGCTTTGCTGAGGCTTCCTGGGGGGCGAAAAGTGGCTGTCATCAGAGTTGCAGAGTTGATGAAGGAGCTTGGATTGGATCATATTGCAGAATCAAGAATTGGTGATGGATCAGATCATGGCATATCAGGTGGGGAAAGGCGTAGAGTTTCCATTGGTGTTGACTTAGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTCAACGTAGTCTCATTGCTTAGATTAATGGCATTTAATCAAGGTAAGACAATTATTTTAACTATCCACCAACCTGGTTTCCGAATCCTAGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTCATGCATAATGGGTCATTGAATCTTCTTGAGGCTAGGCTCAAGTTAGCTGGGCATCACATTCCTGACCATGTCAATGTCCTAGAATTCGCTCTTGATGTCATGGGAAGCTTGGTCATACATACTTCAGAATCTCGGAACAACCAATTTCTTCTCAATGACACAGAGCACAGAGATCACAAGATGAGGATGCAATATTCTAAGATTGTCAAAGAAAAGGCTCTTTTGTACTCAAATTCTCCAATAGAGGAGATTTTAATCCTAGGACAGAGATTTTGCAGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATACAGGCCATAGTAGCTGGATTTGTACTGGGAACCATATTTTTGAATGTTGGCAACCAACAAAGTCATGTAGCATTGCAAACACGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGCCTGCCTATTTTCTTGGAGGAGAGAAGAACTCTGATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAATACCTTTGTGTTTCTTCCTTTCCTTCTAATGGTTGGTCTTCTGTACAGTACTCCAGTTTATTGGCTGGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTGCTCATGTCGAATTCTCTTGTGGCTTGTTTCAGCGCACTAGTGCCAAATTTCATCCTGGGAACCTCAGTGATTGCAGGTCTAATGGGATCTTTCTTTCTATTTTCAGGGTATTTCATATCAAAGGAAAAAATACCCAGTTACTGGATTTTTATGCACTACCTGAGTCTATTCAAGTACCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGAGAGCAGGGGAAAAGGAGATGCATAGAAATTAGCAATGGAGAATGCATATTACACGGAGCTGAGTTCTTAAGACAACAGGGTCTGAAAGAAACACATAAATGGACCAATTTGGCTGTAATGTCGAGCTTTATACTGGGGTATAGAGTGCTTAGCTTTTTTATTCTTTGGTCCAGATGTTACAGAACCAGAAAATAG 1839 0.4127 MGSPFKPISCTRKTPYRLETKNLSYKLCSQLDEYRSLCFGSNPRRGAKFILKDVNCEARSGELTAIAGPSGAGKTTLLEILAGRIPPCKVSGQVLVNHRPMDVHRFRRTSGYVTQEDALFPSLTVRETFMYSALLRLPGGRKVAVIRVAELMKELGLDHIAESRIGDGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVSLLRLMAFNQGKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMGSLVIHTSESRNNQFLLNDTEHRDHKMRMQYSKIVKEKALLYSNSPIEEILILGQRFCSNIFRTKQLFVTRVIQAIVAGFVLGTIFLNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTLMRETSRGAYRVSSYVLANTFVFLPFLLMVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYLSLFKYPFECLMINEYGGEQGKRRCIEISNGECILHGAEFLRQQGLKETHKWTNLAVMSSFILGYRVLSFFILWSRCYRTRK. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06245 612 Pfam ABC-2 type transporter 335 546 IPR013525 GO:0016020|GO:0140359
Seca4g06245 612 SMART AAA_5 60 251 IPR003593 GO:0016887
Seca4g06245 612 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524|GO:0016887
Seca4g06245 612 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Seca4g06245 612 CDD ABCG_EPDR 17 256 - -
Seca4g06245 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 597 - -
Seca4g06245 612 Gene3D - 18 274 IPR027417 -
Seca4g06245 612 FunFam ABC transporter G family member 10 35 280 - -
Seca4g06245 612 Pfam ABC-2 type transporter 231 320 IPR043926 GO:0140359
Seca4g06245 612 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
Seca4g06245 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 266 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06245 Seca-Chr4 123556168 123558006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06245 31 261 Calmodulin-binding Proteins AT2G36910 28.216 1.29e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06245 K05681 - gmx:100776372 1085.48