Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06244 ATGAATTGTCTGTCTATTCTTTTCCGGAAAAGGGGATCTGCCTCAGCAACACAGTCAACCGAAATTGAAATAGATATTTCAGACATTCAGAATGTCAATCTTTACACTTACAAGGAATTGCAAATTGCTACCGAAGGTTTCAGTCCAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTTAGAGATGGTACTCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGTGTCCGTGAGTTCTTGACAGAAATCAAGGTTATCTCTAGTGTAGAGCATGAGAATTTAGTTAAGTTGTATGGATGCTGCGTGGAAGGAAACCGCAGGATTTTGGTATATGGCTATCTTGAGAATAACAGTCTAGCACAAACACTTCTTGGTGGAGGCCATAGTAGCATCCAATTCAGTTGGCATGTCCGGCGAAACATCTGCATTGGGGTTGCCCGGGGTCTTGCATTCCTTCATGATGAAGTTCGGCCACATATTATTCATAGGGACATTAAAGCAAGCAATATATTACTTGACAAAGGCCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAACTTATTTCACCAGATGCGACTCATATAAGTACACTTGTTGCTGGTACAACTGGCTATCTGGCCCCTGAATATGTGGTACGAAATCAGGTGACAAGAAAATCAGATGTCTATAGTTTTGGAATTCTACTACTGGAAATTGTTAGTGGAAAGTGTAACACAAACAGACGTTTGCCTCTTGAAGAACGGTATCTTCATGCAAGGGCATGGGATTTGTATGAGAGGGGGGAGCTGGAAAGTTTGGTGGATATCTTTCTAGATAGAGACTTCAATGTTGAGGAGGCAATAAGTTTTTGTAAGATTGGTCTTCTTTGCATTCAGGATTCTCTTCAGCTCCGACCTTCTATGTCTACTGTACTTGACATGTTGATAGGCAAAATAGATGTGAATGAGAAGAAGATGACAAAACCTGGCTTAATATTTGAATTTATGGAAGCCAAAGACCAAGGGAAACAGAAAGGTAAGCCTGAAGTGGAAGAAACCTCTTTTTTGACTGGATCGGGGAAGCAAGATGATTCATCTTTATCAGGAACCACGAGTTCTTTTGCTGCCATGACCTTCACTTCAATTTATGACCGAAGCAATTAA 1173 0.4101 MNCLSILFRKRGSASATQSTEIEIDISDIQNVNLYTYKELQIATEGFSPANKIGEGGFGSVYKGKLRDGTLAAIKVLSAESRQGVREFLTEIKVISSVEHENLVKLYGCCVEGNRRILVYGYLENNSLAQTLLGGGHSSIQFSWHVRRNICIGVARGLAFLHDEVRPHIIHRDIKASNILLDKGLQPKISDFGLAKLISPDATHISTLVAGTTGYLAPEYVVRNQVTRKSDVYSFGILLLEIVSGKCNTNRRLPLEERYLHARAWDLYERGELESLVDIFLDRDFNVEEAISFCKIGLLCIQDSLQLRPSMSTVLDMLIGKIDVNEKKMTKPGLIFEFMEAKDQGKQKGKPEVEETSFLTGSGKQDDSSLSGTTSSFAAMTFTSIYDRSN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06244 390 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Seca4g06244 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca4g06244 390 MobiDBLite consensus disorder prediction 346 374 - -
Seca4g06244 390 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Seca4g06244 390 MobiDBLite consensus disorder prediction 358 374 - -
Seca4g06244 390 FunFam cold-responsive protein kinase 1 17 122 - -
Seca4g06244 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 348 - -
Seca4g06244 390 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06244 390 CDD STKc_IRAK 53 318 - -
Seca4g06244 390 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Seca4g06244 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca4g06244 390 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Seca4g06244 390 SMART serkin_6 47 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06244 390 Pfam Protein kinase domain 50 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06244 Seca-Chr4 123555616 123564295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06244 35 324 Receptor kinase-like Gene Family AT1G53430 56.552 1.59e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g06244 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06244 - - gmx:100797257 607.06