Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06229 ATGAGTGGGGGTGGGGAGATAGTGGAAGTTGAAGGAGGTCACATTGTACGGTCAAGGGGAAGGAAGGACCGTCACAGCAAGGTATGCACCGCCAAAGGACCAAGGGACCGCCGGGTCCGTCTCTCGGCCCACACTGCCATCCAATTCTACGACGTACAAGACCGACTGGGCTTCGACCGGCCCAGCAAGGCCCTCGACTGGCTCATCAACAAAGCCAAATCCGCCATCGACCAACTCGCTCATCTCCCACCGTGGAAACCCACCCTCTCACACCAAAACGACGACGTAGCGGAGAAAGAGAATCCCAACCCTAACCTCAACCACAACCACAACCACAACGACGAACACTCTGGTTTTCTCCATCACCAACAATTGGAGGAGAATGAGAATGAGAATGAGAATGAGAAAGAGAACCCCAGCCATCACTCTGCGGGTTTGGGGTTTCTTCCGTTGGAAAACGACATCGTCTTCGCCACAACGACGTCGTCTTCGCCTATTCAGTTCCAGAGCTACCCGCCAGATTTGCTTTCCAGAACGAGCAGCCAGGACCTGCGGCTCTCGCTTCAGTCCTTTCAGGACCCGATTCTACTTCACCACCATCACCACCAAAACGAGCACGTGCACCAGCACCAGCACCAGCACCAGCACGTGCTCTTCAGCGGAACCCTTGATGGAATGGTAGCTTGGAATAATGCTAATGCTACTACTGGTGGTGGTGCTATTGATACTGGTAATAACGACGGTTCTGGTGGAGGGTTCGTTTTTAACGTTCCTTCGGCGTTACCGTCAGTGATGTTTGGGCAGAGCCAGTATCTTTCTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAACCCTTCCATTCGTGCTTGGATTGACGCGCCGTCGTCTTTCGTCGCCGCTACGGATCATCGACGTCACTGTCTTTCACCGGCGGCGCTGGTGCATCAGTCTTCTTCTTCATCGTCGGGTGCCGGATTCGCCTCTGGTGGCTTCTCCGGTTTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGGAGCACGGCGGCGTCTCCGATAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCGTTGA 1092 0.5522 MSGGGEIVEVEGGHIVRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKALDWLINKAKSAIDQLAHLPPWKPTLSHQNDDVAEKENPNPNLNHNHNHNDEHSGFLHHQQLEENENENENEKENPSHHSAGLGFLPLENDIVFATTTSSSPIQFQSYPPDLLSRTSSQDLRLSLQSFQDPILLHHHHHQNEHVHQHQHQHQHVLFSGTLDGMVAWNNANATTGGGAIDTGNNDGSGGGFVFNVPSALPSVMFGQSQYLSSQRGPLQSSNNPSIRAWIDAPSSFVAATDHRRHCLSPAALVHQSSSSSSGAGFASGGFSGFRVPARIQGEEEEHGGVSDKPSSASSDSRR. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06229 363 MobiDBLite consensus disorder prediction 336 363 - -
Seca4g06229 363 MobiDBLite consensus disorder prediction 109 140 - -
Seca4g06229 363 ProSiteProfiles TCP domain profile. 21 79 IPR017887 -
Seca4g06229 363 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 280 IPR005333 GO:0003700
Seca4g06229 363 Pfam TCP family transcription factor 20 141 IPR017887 -
Seca4g06229 363 MobiDBLite consensus disorder prediction 85 146 - -
Seca4g06229 363 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g06229 363 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06229 Seca-Chr4 123067862 123068953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06229 3 362 TCP Transcription Factor Family AT1G53230 47.545 1.45e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g06229 TCP 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06229 - - gmx:100796938 378.637