Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06220 ATGGAAAACATGCATAAGTTTGTTCCTCTCATTTGTTTTATCACCATGCTTAATATTGTATTAGGACATGCAGCAGCCCATCATGAAGGTGCTGCTGGAATGAATTTCATGGGCATAATAGGAGCTATTGCAGACAAAAATTCCCGCAGTGGTAAAGAGGCAATAGTGGCTATTAAGATGGCATTGGAAGATTTCTATCAGTACAGCAATCAAAGGTTTGTTCTAAGGATAAGAAACTCTCAAGGGGATCCCCTTAAGGCTTCTCTTGCAGCAAGAGATCTTATTGAGAAAAAATACGTGCAAGCAGTTATAGGACCGCAAACATGGGAAGAGACAACTTTAGTGGCTGAGGTTTGTAGTGAAAGTAATACACCAGTTCTATCTCTAGCTGATGCAGCTCCAAAGTGGTCAACTTTGAAATGGCCCTTTCTGGTGCAGGCCTCACCTAGTCAATTTAAGCAGATGAAAGCAGTTGCTGCTATTGTTCAATCCTGGAAATGGTACTGTGTTAACATAATATATGAAGATAGGGATGCTTCATCCTCACGAGTTTTATCTAATATCTATAGAGCCCTCAGTGAAGCAGATGTACGTATAAGCAGTGTCTTAGCCATTCCACCTTTTGTTTCCTCTTCATTGTCACAGGAACTTGAGAAACTTAGAGGAGGCCAATGTAGAGCCTTTGTTGTCATCTCTTCCCTTCCTGTGGCCATAGACCTGTTTGAAACTGCAGATAAGATGAATATGATGGAGAAAGATTCTGTGTGGATCACCACTGGTCCTTTTACAAGTCTTGTCCATTCCTTGAATGCATCCACTATATCCTCTATGCAAGGGATCATTGGAGTCAAGAGCTATGTCCCAGAAATAGGACACCAATATGAGGATTTCTACCTTAAATTTCGCCAGAAGTTTAGCTTAGATAACCCTCAGGAATCTAATAATGAGCCTGGGATATTTGCAGTCCATGCCTATGATGCTGCATGGACTGTGGCTCTAGCCATGAGCCAAACAAACATTAAAGGGAGCCAAGTTTTGTTAGATAAGATTTTGGTTAATAACTTTACTGGCCTAAGTGGAAAAATTCATTTCAATGATCATAAGTTAGCTCCCTTACAGACTTTTGAGATTATCAATGTGATAGGGAAGGGTTACAAGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAATTAATATTGGCCAAAATGCTACGTACAGTTCCTCAATGAAGGAACTGGGACAAGTTTTGTGGCCAGGAAGACCTTGGGACACTCCAAGAGGATGGGCCCTGCCAACAAGTGATAAACCATTAAGAGTTGGGATCCCTGCTTTGGCCCCAATGAAACAATTTATAAATATAACTACAGATCAATCTACAAATACTACTTCCTTCGGGGGATTCAGTATTGATCTTTTTAGAGAAACTGTGAAGTTGCTGCCCTACCATTTGCCATACAAATTTTGTACTTTCAATGACACATATGATAATTTGGTGAAACAAATTTATTTGAAGAAACACTGGCTAATGACACTTGTTCTTCTCATCTGTACTTGCTTATGCATGAAGCAGAATTTTGATGTAGTGATTGATGTAACAATAATTTCAAATCGATATCAATATGCTGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTCCCCCTTCAATCAAAAGCAGGGAACAGAGCTTGGATATTTGTGAAGCCTTTTACAACGACCATGTGGATTCTAATAGTGGTCATGGTTATCTACAATGGTTTCGTTTTATGGATGTTAGAAAGACACCATTACCCTGAACTTAAGGGCTCCATGCTGAATCAAACTGGGACTATGGCTTGGTTAACATTGACCCCTCTCATCAACTTCAACGGAGATAAGTTACACAACAGTTTATCAAGGATGACTATGGTGGTTTGGCTCTTTGTGGCACTTATCATAACACAGACTTACTCAGCTAACCTTACCAGTATGCTAACAGTTGAACGACTTGAACCCACAGTAGATAATGTTGATCAGCTTAGGAATAGCAACGCTGTGGTTGGATACAGTATAGGATCCTTCTTGAAAAACTATCTGCAGGAAGTGTTACAGTTCCACCCTACAAACATCAGACAATTTGGTGCACTAGAAGAGTATGCTGAAGCTCTCAGAAGAAAAGAAATAGCAGCTGCCTTTTTTGAACTTCCTGCAGCCAAAATTTTCCTTGCAAAGTACTGCAAAGAGTTTGTTCAAGCTGGGCCTTTGTATAAAATTGGAGGATTTGGATTTGCATTTCAAAGGGGTTCTCCATTACTTCCAAGTGTAAACAAAGCACTGCTAGATTTATTTGAAAGTGGCAAGCTACGTGAATTAGAGAACCAAATGCTTGCATTAGAGAAATGTGAAAACACAGAACCAGATGGCAACACTGCAAGTCTCAGCCCCAATAGCTTCTGGGCCCTCTTCACATTGACAGCAGGCACATCAACAATTTCTCTCTTGGCTTACATCATTGGTATGAATTATTCAAACCATGAACAAAAAACAATCTGGAGGCAAATGATGGTAATGATTCAACTATGTGGATATGCAAATAGACGAATCTTAAGAAGAGATAGTGATGTTGCAGAAAGTTCTATGGACTCTCCAAATACACATGCTATGCCAAATCAAGTTTAA 2673 0.3996 MENMHKFVPLICFITMLNIVLGHAAAHHEGAAGMNFMGIIGAIADKNSRSGKEAIVAIKMALEDFYQYSNQRFVLRIRNSQGDPLKASLAARDLIEKKYVQAVIGPQTWEETTLVAEVCSESNTPVLSLADAAPKWSTLKWPFLVQASPSQFKQMKAVAAIVQSWKWYCVNIIYEDRDASSSRVLSNIYRALSEADVRISSVLAIPPFVSSSLSQELEKLRGGQCRAFVVISSLPVAIDLFETADKMNMMEKDSVWITTGPFTSLVHSLNASTISSMQGIIGVKSYVPEIGHQYEDFYLKFRQKFSLDNPQESNNEPGIFAVHAYDAAWTVALAMSQTNIKGSQVLLDKILVNNFTGLSGKIHFNDHKLAPLQTFEIINVIGKGYKEIGFWSDGLGFSINIGQNATYSSSMKELGQVLWPGRPWDTPRGWALPTSDKPLRVGIPALAPMKQFINITTDQSTNTTSFGGFSIDLFRETVKLLPYHLPYKFCTFNDTYDNLVKQIYLKKHWLMTLVLLICTCLCMKQNFDVVIDVTIISNRYQYAEFTQPYTDPGVVMVVPLQSKAGNRAWIFVKPFTTTMWILIVVMVIYNGFVLWMLERHHYPELKGSMLNQTGTMAWLTLTPLINFNGDKLHNSLSRMTMVVWLFVALIITQTYSANLTSMLTVERLEPTVDNVDQLRNSNAVVGYSIGSFLKNYLQEVLQFHPTNIRQFGALEEYAEALRRKEIAAAFFELPAAKIFLAKYCKEFVQAGPLYKIGGFGFAFQRGSPLLPSVNKALLDLFESGKLRELENQMLALEKCENTEPDGNTASLSPNSFWALFTLTAGTSTISLLAYIIGMNYSNHEQKTIWRQMMVMIQLCGYANRRILRRDSDVAESSMDSPNTHAMPNQV. 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06220 890 SUPERFAMILY Periplasmic binding protein-like II 416 791 - -
Seca4g06220 890 SMART GluR_14 438 796 IPR001320 GO:0015276|GO:0016020
Seca4g06220 890 FunFam Glutamate receptor 568 706 - -
Seca4g06220 890 PIRSF IGluLR_plant 2 886 IPR017103 -
Seca4g06220 890 Gene3D - 757 792 - -
Seca4g06220 890 Gene3D - 150 392 - -
Seca4g06220 890 Pfam Receptor family ligand binding region 57 381 IPR001828 -
Seca4g06220 890 FunFam Glutamate receptor 154 315 - -
Seca4g06220 890 Pfam Bacterial extracellular solute-binding proteins, family 3 525 792 IPR001638 -
Seca4g06220 890 CDD PBP1_GABAb_receptor_plant 40 401 IPR044440 -
Seca4g06220 890 Gene3D - 433 567 - -
Seca4g06220 890 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 842 IPR015683 -
Seca4g06220 890 Pfam Ligand-gated ion channel 793 825 IPR001320 GO:0015276|GO:0016020
Seca4g06220 890 CDD GluR_Plant 437 794 - -
Seca4g06220 890 SUPERFAMILY Periplasmic binding protein-like I 39 430 IPR028082 -
Seca4g06220 890 Gene3D - 725 756 - -
Seca4g06220 890 Gene3D - 46 373 - -
Seca4g06220 890 Gene3D - 568 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06220 Seca-Chr4 122528268 122531731 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06220 40 857 Ion Channels AT2G29110 31.279 5.36e-135 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06220 - - gmx:100799573 1145.95