Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06198 ATGAAGAAACCGAACCAAACCCACCTCAACCCCAACTGGGTTCAACTTCAACAGAAGCTGAAGCTGAATGGCTCCAAGGCTCCAAGGCCCTTCAAAAAATCCGAAGAAGACAACACCCCAAAATCAATATTGGGGAAACGTAAAGAGAGGCCAGATGATGAGTCCAATGATTGTCAGATTAATCCTCTAATTCCTGTAAACGACGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGTGTTGGTCAAGGAAACAAAAGTGCCCTTGGAAGAGTAACACTGGTTAATAAGTGGGGAAATGTTATTTATGATGAGTTTGTGCGGCCGATTGAGCGAGTTGTTGACTTCCGCACAAAAATTAGTGGCATAAGACCTCGGGATTTGAAAAAAGGTTCGCATTATACTTCCTTTTCTCTACATTCTACAATTTTAAATTATAGTTGA 456 0.4167 MKKPNQTHLNPNWVQLQQKLKLNGSKAPRPFKKSEEDNTPKSILGKRKERPDDESNDCQINPLIPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDLKKGSHYTSFSLHSTILNYS. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06198 151 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 134 IPR047021 GO:0004527
Seca4g06198 151 SUPERFAMILY Ribonuclease H-like 66 139 IPR012337 -
Seca4g06198 151 MobiDBLite consensus disorder prediction 21 64 - -
Seca4g06198 151 Gene3D - 70 145 IPR036397 GO:0003676
Seca4g06198 151 MobiDBLite consensus disorder prediction 28 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06198 Seca-Chr4 121996257 121999063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06198 53 135 C2H2 Transcription Factor Family AT2G48100 37.234 3.40e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06198 K18327 - gmx:100819122 249.98