Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06181 ATGCTTGGAGATCGGGGAGGCATTCGCTATAAAGAAGGTCTTGCAGGACAAGCGATCTTTAGGGCACTAGCATATATCCATACTGTACATGGAGTTTTCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTTTGCTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCCCAGCTACCTAATGGTCGTCCGCTGCCTCCCTTTTTCAACTTTAAACAAGAATTAGCTGGAGCACCCCCTGAAGTGGTCCACAAACTCATCCCAGACCATGTTAGGCAACAAACTGGTATTGGCTTCCCATATCCGGCCAGTACATAA 384 0.4583 MLGDRGGIRYKEGLAGQAIFRALAYIHTVHGVFHRDVKPQNILVDPLTHQVKLCDFGSAKVLLEACAHPFFDELREPNAQLPNGRPLPPFFNFKQELAGAPPEVVHKLIPDHVRQQTGIGFPYPAST. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06181 127 Pfam Protein kinase domain 18 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06181 127 Gene3D Transferase(Phosphotransferase) domain 1 9 96 - -
Seca4g06181 127 SUPERFAMILY Protein kinase-like (PK-like) 19 64 IPR011009 -
Seca4g06181 127 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06181 127 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 19 63 - -
Seca4g06181 127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 32 44 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06181 Seca-Chr4 121596155 121605181 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06181 19 60 Core Cell Cycle Gene Families AT3G48750 54.762 4.14e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g06181 Pkinase 1.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06181 K14502 - mus:103978372 125.561