Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06180 ATGGACATTTTGGTGGAGGCTTCTATGGGTTCCCCTACTGTGGAGACTTTTGAAGATAATTACAGAGAGGAGTTGAATGGAATGCAAATTGATAATGTAGAGAATGATTGTTGTGACGATGGTCATGAAGAGAACAATGCAAATTCAAATAATGAGGATAATGTAGAATCAGATATGTTTAAAGTAGATGAAGGTTTTAATATGGAAAATGTAGACTTCATTAATACAACAGAAGCTGACATGAAGTTGTACCATTTTGGTAGTCGTGATGTGGCATTTGATTTCTATGACATGTATGCAAAGAAAAAGGGGTTTGCAGCTCGAAGATGGAATGTTGTTAAAAACAAGAATGGTGAAGTCTCTCATCAAACATTTGTTTGTTTCAAGCAGGGATATCGGTTGGACAAGTATTTGAAGAGGAAAAATCGGAAGAGGGTACCAAGAGCATTGACCAGGTGCGGTTGTAATGCTTTACTCCGTGTTCGGTACATTCAAGAAACGGGTCGATGGCATGTTAAAGAATTCATAGATAATCATAATCATGACTTGCTTTCTGAGAAATTTTTTGGGATGCTTTCTACACATAGGAAGTTGCACGAGTGTGATTTATTACAGTTGAATAACATGAGAGAGGCTGGCATTGGTGTTACACAAATATATGGTTTAGCTGCAAACCAGACTGGTGGTTATGATAGGATGGGTTTTAGAAAAAAGGACATGTATAATGAGATTGAAAAACATAAGCGAATGTTAATGAGTGATGTTAGATCTGCATTTTCATATTTGAGAGAGTTGCGCTCATGTGATCCCAAAATGTTCTGGCGTCGCACGGTTGATTCTGAAGGTCGGTTGCAAAACCTTTTTTGGACTGATGGAGCTAGTCGTGCAGAATACAATGTATTTGGGGATGTTGTTGCTTTTGATGCTACATATCGTCGTAATAAGTACATGTACCCTTTGGTTGTGTTTGCTAGAGTAAATCATCACAATCAAACAATTGTCTTTGGGAGTGGGCTAGTTGCTAATGAGACAGAAGAGACGTATGTGTGGTTGTTGAAACAGTTTGTGGAAGCCATGAAAGGGAAGCTACCATCTTCTGTCATAACTGATGGTGATCTTGCTATGAGGAATGCAATAAGACAGGTATTTCCCTCAGCTCATCATAGATTGTGTGCATGGCATCTGTTAAGGAACGCCACTAGTAACATTAACAATGCACGTTTCACATCTAAATTTGGAAGATGTATGCTTGGTGATTATGATGTGGCCAGGTTCCGAACTAAGTGGGATGAAATGATTAATGAGTTTCAATTGCATGGTAACCAGTGGATAAAAGAAGTTTATGAGAAGAGGAAGATATGGGCAACTGCCCATATTAGGGGAAATTTTTTTGCTGGTTTTCGCACGACTTCAAGGTGTGAAGGGATGCATGCTCAAGTGGGTAGATTTGTTCACTATCGCAATAACCTTACTGAGTTTTTGAAGCAATTCTCACGTTATTTGGCTTACATAAGGCAACGAGAGGTTGAGGCGGATTTTGAATCTATAATTGGTGAGCCAGTTTTGCAAACATCGATGGAAGACATTGAGAGGTCTGCAGCCAAGTTGTATACAAGGAAATTATTTTTATTGTTTAGGCCAGTGTTGGAGAGGGCGTGTGGTGTGAAGGTAGTCACTTATGAGCAAACTCTTAATGGTATTGATATATGTTATGAGTAA 1719 0.388 MDILVEASMGSPTVETFEDNYREELNGMQIDNVENDCCDDGHEENNANSNNEDNVESDMFKVDEGFNMENVDFINTTEADMKLYHFGSRDVAFDFYDMYAKKKGFAARRWNVVKNKNGEVSHQTFVCFKQGYRLDKYLKRKNRKRVPRALTRCGCNALLRVRYIQETGRWHVKEFIDNHNHDLLSEKFFGMLSTHRKLHECDLLQLNNMREAGIGVTQIYGLAANQTGGYDRMGFRKKDMYNEIEKHKRMLMSDVRSAFSYLRELRSCDPKMFWRRTVDSEGRLQNLFWTDGASRAEYNVFGDVVAFDATYRRNKYMYPLVVFARVNHHNQTIVFGSGLVANETEETYVWLLKQFVEAMKGKLPSSVITDGDLAMRNAIRQVFPSAHHRLCAWHLLRNATSNINNARFTSKFGRCMLGDYDVARFRTKWDEMINEFQLHGNQWIKEVYEKRKIWATAHIRGNFFAGFRTTSRCEGMHAQVGRFVHYRNNLTEFLKQFSRYLAYIRQREVEADFESIIGEPVLQTSMEDIERSAAKLYTRKLFLLFRPVLERACGVKVVTYEQTLNGIDICYE. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06180 572 Pfam MULE transposase domain 304 398 IPR018289 -
Seca4g06180 572 PANTHER OS01G0519700 PROTEIN 85 553 - -
Seca4g06180 572 Pfam FAR1 DNA-binding domain 94 184 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06180 Seca-Chr4 121536188 121539867 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g06180 MULE 1.5e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06180 - - adu:110280242 579.711