Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06177 ATGTCAGCTAGTGTCTCGAAGGGTAATGATGCAGTCACTGGTCACATAATATCAACCACAATTGGAGGGAAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGCATTTGCTATAAAGAAGGTCTTGCAGGACAAGCGGTACAAAAATCGTGAATTGCAGTTAATGCGCGTGATGGATCATCCAAATGTAATTTCCCTGAAGAATTGCTTCTTCTCTACAACAAGCAAAGATGATCTTTTTTTGAACTTGGTCATGGAATATGTCCCTGAGACAATGTACCGAGTTCTAAAGCACTACAATAGCATCAACGAAAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGCACTAGCATATATCCATACTGTACTTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTTTGGTCAAGGGTGAATCAAACATTTCATACATAAGTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGTGCGACAGAATATACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCGGAACTTCTCCTAGGCCAGCCACTGTTCCGGGGAGAAAATCAGGTGGACCAACTTGTGAAGATTATTAAGGTTCTTGGTACTCCGACTCGAGAAGAAATTCGTTGCATGAACCCTAATTGTACAGTTTTTCGATTCCCGCATATGAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAGTCTTCGTTGTCGTGCATTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCCCGGCTACCTAATGGTCATCCGTTGCCTCCCCTTTTCAACTTTAAAAAAGAACAGTTAGTTGGAGCACCCCCTGAAGTTGTCCACAAACTCATCCCAGACCATGTCAGGCAACAAACTGGTATATACTTCCCATATCCAGCCAGTACATAA 1128 0.4246 MSASVSKGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAFAIKKVLQDKRYKNRELQLMRVMDHPNVISLKNCFFSTTSKDDLFLNLVMEYVPETMYRVLKHYNSINERMPLIYVKLYTYQIFRALAYIHTVLGVCHRDVKPQNILVDPLTHQVKLCDFGSAKVLVKGESNISYISSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFRGENQVDQLVKIIKVLGTPTREEIRCMNPNCTVFRFPHMKAHPWHKVFHKRMPLEAIDLASRLLQYSPSLRCRALEACAHPFFDELREPNARLPNGHPLPPLFNFKKEQLVGAPPEVVHKLIPDHVRQQTGIYFPYPAST. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06177 375 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Seca4g06177 375 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Seca4g06177 375 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 364 - -
Seca4g06177 375 CDD STKc_GSK3 29 321 IPR039192 -
Seca4g06177 375 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06177 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Seca4g06177 375 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06177 375 Gene3D Transferase(Phosphotransferase) domain 1 114 362 - -
Seca4g06177 375 FunFam Shaggy-related protein kinase kappa 114 362 - -
Seca4g06177 375 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g06177 375 SUPERFAMILY Protein kinase-like (PK-like) 33 341 IPR011009 -
Seca4g06177 375 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06177 Seca-Chr4 121410533 121413550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06177 38 344 MAP Kinase Gene Family AT3G59790 33.540 1.39e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g06177 Pkinase 1.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06177 K14502 - qsu:111995841 675.626