Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06176 ATGGCAAGAGACAGAGCCACCGCACTCGCTGGGTCCAACAACCCTTCACCCCCAAACGCCAAGGAGATCCGTTACAGAGGCGTCAGGAAGCGTCCATGGGGACGTTACGCCGCTGAGATTCGCGATCCCGGGAAGAAAACCCGTGTCTGGCTCGGCACCTTCGACACCGCTGAGGAGGCGGCGAGGGCTTATGACAAGGCGGCGCGTGAGTTCCGCGGCGCCAAGGCTAAGACCAATTTTCCCACCCCATCTGAGGTCATCAACAACAACAACACTCGCTCTCCTAGCCAGAGCAGCACCCTTGAATCTTCCTCTCCACCGCCGCCGCCGCCGCCGCTGGACCTCACCCTCACACCGCTGTCCGCCGCCACCGTTGGCGGCGGTTCCATGGCGTTCCACGTGTCACGTCCCGTGTTGTTCTTCGACGCGTTTGCTCGGAACGCGATGAGCGTCGGTCGCCGTGAGATGTGCTTGTTCGACCGCCCTGTTGCTGATTTTCACCGCGCCGCCGTCCCAGCCGCCGCCGCTCCGAGTGACTCTGATTCTTCCTCCGTCGTGGACTACGAGCGTGTCCCGCCTCACAGACTCTTGGATCTTGATCTGAACGCCCCTCCTCCACCAGAGCTTGTCTGA 633 0.6224 MARDRATALAGSNNPSPPNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGAKAKTNFPTPSEVINNNNTRSPSQSSTLESSSPPPPPPPLDLTLTPLSAATVGGGSMAFHVSRPVLFFDAFARNAMSVGRREMCLFDRPVADFHRAAVPAAAAPSDSDSSSVVDYERVPPHRLLDLDLNAPPPPELV. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06176 210 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Seca4g06176 210 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca4g06176 210 Coils Coil 57 77 - -
Seca4g06176 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 186 - -
Seca4g06176 210 MobiDBLite consensus disorder prediction 75 114 - -
Seca4g06176 210 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Seca4g06176 210 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca4g06176 210 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Seca4g06176 210 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g06176 210 MobiDBLite consensus disorder prediction 81 101 - -
Seca4g06176 210 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca4g06176 210 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca4g06176 210 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Seca4g06176 210 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06176 Seca-Chr4 121317599 121318231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06176 12 153 AP2-EREBP Transcription Factor Family AT3G15210 56.410 1.91e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g06176 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06176 K09286 - gmx:100500601 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06176 4 121317599 121318231 Seca6g04864 6 116025694 116026374 ECH
Seca4g06176 4 121317599 121318231 Seca4g06176 4 121317599 121318231 ECH