Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06173 ATGGATAATAACTACTACCACCAACATCATTTGGACAAAACTGATGCAAATTTGCCTCCTGGCTTTAGGTTCCACCCTACTGATGAAGAACTCATCACCTACTACCTTCTCAAGAAGGTTCTTGACAACACCTTCACTGGAAGAGCTATAACTGAAGTTGACCTTAACAAGTGTGAGCCTTGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAAAAGGAGTGGTATTTCTTCAGCCTACGTGATAGGAAGTACCCAACTGGGCTACGTACAAATAGAGCCACAGAAGCTGGTTATTGGAAAGCCACTGGGAAAGATAGAGAGATTTATAGCTCAAAATCTTGCTCCCTTGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGCAGAGCTCCTAAAGGGGAAAAAAGCAACTGGGTCATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCACTACCTCTCTAGGAACACCAAGGATGAGTGGGTCATATCTCGGGTGTTTCAGAAGAGTAGCACTGGAAATGGAGGCTCTACCATATCTGCTTCTACCACAAGTGGTTCCAAGAAAACAAGAATGAGTATTAGCATGAGCTTGAGCACAACCTCTGCTAGTAACAACATGAGTCTCTGCCCTGAACCAAGTTCTCCCTCTTCAGTTTATCTTCCACCTCTTCTAGACTCTTCTCCTTACTCCACCACCAACCCCACCACCACCACCACAACCACCGCCAGCACCGCCACATTCAACGACCGTCAAAGCTGTTCCTTTGACAGCACCCAAAGGGAGCACGTGTCCTGTTTCTCCACAATATCTGCAGCAACTGCCGCTGTTGTTTCCACAAATAACAACTTTATCAATGCAAGCTTCGACCCTTTTGCTTCTTCTGTTGACCCTTTTGCTCGTTTTCAAAGAAACGCTGGTTTCTCTCCCTTTCCAAAGTTGTCTCTACAAGAAAACCTTCAGCTTCCTTTGTTTCTTCCCACGGCGGCGCAGCCCTTCCACGGTGGCGGTTCCGGTGACTTTCTTGGCTGCGGCGCCGTTGGGGGATGGCCGGTGCCGGAGGAGCAAAGGGTGGCTGATGGTGGTTCTAGCTTGGCATTGGGATCATCTGAGCTTGATTGCATGTGGGGCAACTATTGA 1143 0.4759 MDNNYYHQHHLDKTDANLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAITEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKSCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNTKDEWVISRVFQKSSTGNGGSTISASTTSGSKKTRMSISMSLSTTSASNNMSLCPEPSSPSSVYLPPLLDSSPYSTTNPTTTTTTTASTATFNDRQSCSFDSTQREHVSCFSTISAATAAVVSTNNNFINASFDPFASSVDPFARFQRNAGFSPFPKLSLQENLQLPLFLPTAAQPFHGGGSGDFLGCGAVGGWPVPEEQRVADGGSSLALGSSELDCMWGNY. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06173 380 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
Seca4g06173 380 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Seca4g06173 380 FunFam NAC domain-containing protein 100-like 27 174 - -
Seca4g06173 380 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Seca4g06173 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 240 - -
Seca4g06173 380 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06173 Seca-Chr4 121190720 121193237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06173 1 380 NAC Transcription Factor Family AT5G53950 49.510 1.60e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06173 NAM 8.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06173 - - vun:114185732 510.76