Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06166 ATGAGTACCAGTGCCAGGGAAATCCTTCATAAGATGAAGGAAAAAGTTGGGTTGGGTTCATCAGACACTGATTCAGGGAAAGGAAAGAGCAAGATGTCAAAGCGCATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCATATCATGCCATGGAGGATTATGTAGTTGCTCAATTTAAGCAAGTTGATAACAATGAATTGGGTTTGTTTGCAATATTTGATGGCCACGCGGGTCACAATGTACCTGATTACTTGCGGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAAATGCTGTCAAGAGAGCATATAGTATAACTGATTCTAGTATTTTAGAGAAATCAGGTGAATTGGGAAGAGGGGGTTCAACTGCAGTTACGGCAATATTGATCAATTGTCAGAAGTTAGTAGTAGCCAATATCGGGGATTCTCGGGCTGTCTTATGCAAGAAAGGTGTGGCCAAACAACTATCAGTGGATCATGAGCCAATCACAGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAGATTTCCAGGGGATGTCCCTCGGGTTGATGGTCGGCTAGCAGTGTCAAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCACATGTGACAGTGGAGGTGATAAATGATGATGCAGAGTTTATTATATTAGCCAGTGATGGATTATGGAAGGTAATGTCAAATCAAGAAGCAGCTGATTTTATCAAAGATATAAAGGATGCTCGGGCTTCAGCAAAGCGCCTTACTGAAGAAGCACTTAACAGGAAAAGCACGGATGATATCTCCTGCATTGTTGTGAAATTTCAGTGA 858 0.4103 MSTSAREILHKMKEKVGLGSSDTDSGKGKSKMSKRITHGFHLVKGRSYHAMEDYVVAQFKQVDNNELGLFAIFDGHAGHNVPDYLRSHLFDNILKEPDFWKEPANAVKRAYSITDSSILEKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKKGVAKQLSVDHEPITEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVTVEVINDDAEFIILASDGLWKVMSNQEAADFIKDIKDARASAKRLTEEALNRKSTDDISCIVVKFQ. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06166 285 Gene3D - 32 285 IPR036457 -
Seca4g06166 285 PANTHER PROTEIN PHOSPHATASE 29 284 IPR015655 GO:0004722|GO:0006470
Seca4g06166 285 ProSitePatterns PPM-type phosphatase domain signature. 69 77 IPR000222 GO:0043169
Seca4g06166 285 FunFam Probable protein phosphatase 2C 39 27 285 - -
Seca4g06166 285 CDD PP2Cc 44 284 IPR001932 -
Seca4g06166 285 ProSiteProfiles PPM-type phosphatase domain profile. 37 284 IPR001932 -
Seca4g06166 285 SMART PP2C_4 27 282 IPR001932 -
Seca4g06166 285 Pfam Protein phosphatase 2C 49 277 IPR001932 -
Seca4g06166 285 Coils Coil 247 267 - -
Seca4g06166 285 SUPERFAMILY PP2C-like 33 284 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06166 Seca-Chr4 121008861 121012666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06166 4 285 PP2C-type Phosphatase Gene Family AT3G15260 75.347 3.98e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06166 K17506 - gmx:100500617 498.049