Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06164 ATGGAGAGGAAGCAAAAGGAAATTGAGAAGGTGAGGAAGGACAACACAGTTAAAGAAATAGAGGAGGAGGAGGAGGAGGATGAAAGTGGTGATGGTGGTCCTGCAGAAGATGAGAAGAAGAAAGGTGCTGATGTGAGTGGGAGAAAAGGGTCAAGTTGGGGTGGAAGAGTTTCTCCACCTTCCTGTCAGGCAGAGAGTTGTGATGCTGATTTGAATGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCAGCATCTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCAGGAGACGCTTAGCCAGACACAATGAGCGGCGCAGGAAAATCAATGCTGAAACTTGCAATAAAGGATGCAAAAGCATCAAAGTGAAGTGCCCCACGGAAAGCCACTTCAGAAATGGTGATTACTGGGGAGGAATTCAGATGAACATGGCAAGGAGTTCTGGTTACAAGAACTTGTTCCATATCAGATGA 555 0.4739 MERKQKEIEKVRKDNTVKEIEEEEEEDESGDGGPAEDEKKKGADVSGRKGSSWGGRVSPPSCQAESCDADLNVAKRYHRRHKVCELHSKAASVVVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKINAETCNKGCKSIKVKCPTESHFRNGDYWGGIQMNMARSSGYKNLFHIR. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06164 184 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Seca4g06164 184 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 137 IPR044817 GO:0003677
Seca4g06164 184 Pfam SBP domain 62 135 IPR004333 GO:0003677
Seca4g06164 184 Coils Coil 112 139 - -
Seca4g06164 184 MobiDBLite consensus disorder prediction 1 64 - -
Seca4g06164 184 Coils Coil 1 28 - -
Seca4g06164 184 Gene3D - 53 123 IPR036893 GO:0003677|GO:0005634
Seca4g06164 184 FunFam Squamosa promoter-binding-like protein 14 54 123 - -
Seca4g06164 184 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Seca4g06164 184 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06164 Seca-Chr4 121001123 121002970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06164 16 144 SBP-box Gene Family AT3G15270 51.938 1.41e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g06164 SBP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06164 - - gmx:100305703 252.677