Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06108 ATGCTTAGAGCTTTAAAGAAATTGCCTCCCTTGGTGAACTATGGAAGGCATGACATAGTAAGAAGTTGTAACGAGTGTGCCATTTGCTTGGAAGATTTCGAAGTAGGCCAGTTCTGCCAAGTTTTTCCTGTATGCAATCATATTTTTCATTCAGATTGCATAGACAACTGGTTGCAGAAGAAATCAACATGTCCAATATGTCGTACTTGCATGCTTTCAACAGTAGTTGTTCTTCTTCTATTAAAAATCTGTGAATACATATCTGATGCTCTTCTTGAAACACTTGAGGTTGATATTGAAGAAGGAAGAATAAGGACTTTGGTATTTAGATCTTCTTTGACATACCAAGCTGCTTTGAATCAAATAAGTGGTAGTAGGGAAAGATTACACACACATATACAAGGTTCTGAGACAAGATCAATTGATAAACAGACCTTAATCAAACTGCCACAGCATGTAATTTATGGACAAGAACAAGATGAGTTAAGAACATTTTGTAGTGATTGTGTCATATGTTTGGAGAGCTTCATCTCTGGTGAATCCTGCCAAAGTCTCCCACTGTGCAATCACTTATTTCATTCATATTGCATAAAGCATTGGCTTAAGGACAATGTCACTTGCCCAGTTTGTCGAAATTGTTTATTAGAAACATGA 654 0.3654 MLRALKKLPPLVNYGRHDIVRSCNECAICLEDFEVGQFCQVFPVCNHIFHSDCIDNWLQKKSTCPICRTCMLSTVVVLLLLKICEYISDALLETLEVDIEEGRIRTLVFRSSLTYQAALNQISGSRERLHTHIQGSETRSIDKQTLIKLPQHVIYGQEQDELRTFCSDCVICLESFISGESCQSLPLCNHLFHSYCIKHWLKDNVTCPVCRNCLLET. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06108 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 5 72 - -
Seca4g06108 217 SMART ring_2 169 210 IPR001841 -
Seca4g06108 217 SMART ring_2 26 67 IPR001841 -
Seca4g06108 217 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Seca4g06108 217 SUPERFAMILY RING/U-box 22 72 - -
Seca4g06108 217 Pfam Ring finger domain 168 211 IPR001841 -
Seca4g06108 217 Pfam Ring finger domain 24 68 IPR001841 -
Seca4g06108 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 74 IPR013083 -
Seca4g06108 217 ProSiteProfiles Zinc finger RING-type profile. 26 68 IPR001841 -
Seca4g06108 217 CDD RING-H2_PA-TM-RING 25 68 - -
Seca4g06108 217 SUPERFAMILY RING/U-box 168 215 - -
Seca4g06108 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 215 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06108 Seca-Chr4 119755195 119759433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06108 3 72 C3H Transcription Factor Family AT3G10910 48.571 1.23e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06108 - - pvu:PHAVU_005G065200g 190.66