Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06075 ATGTCAGCTAACAAGAGTTCTGAAGAGAATGAGTTGGGAAGGAACAAAGGGAAAGAAGTTGTGAGTGACAACATGGAAGTTCCTCCTGTCGCTGACGCGGACGAGGCCCTAGAGGATCCCGATTCAGGCAAGAGGAAGCGGTATCACCGCCACTCTCAGCACCAGATACAACAGATGGAAATGTTCTTTAAGGAGTGCCTTCACCCAGATGACAAGCAAAGGAACGCCTTGGGCGATGAGCTCGGGCTCGACCCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGTGCCCAAGTGAAGGCTCAACAAGAACGCCATGACAATGCTCTTCTGAAGGGTGAGAATGAAAAGCTTCGTGCTGTCAATGCTAGGTACAAGGAGGCACTGAGTTATGTTACATGCCCTACCTGTAGAGGGCCCTTTATTCATAGGATGTTGAGAATGACTGCAAAAATGATGGGAAAGCCTATGACACCGCTCTCTTACAATCACATGCCTTCGTGCACGCTTGATCTTGGGGGTGGTAACTATGGAGCACAGTCAGGCACGATAAGGGAAATGTATGGCGGTGGTAACTTTTCCATAAGGTCACTCCCTGTTCGTACGGAAGCTTATAAAACCTTGATTGTGAACCTTGATTTTTCCGGAATGGAGGAAATGATAAGCTTAGCCGCCTGTAGTGAACCTCTATGGAGGAACTGA 702 0.4801 MSANKSSEENELGRNKGKEVVSDNMEVPPVADADEALEDPDSGKRKRYHRHSQHQIQQMEMFFKECLHPDDKQRNALGDELGLDPLQIKFWFQNKRAQVKAQQERHDNALLKGENEKLRAVNARYKEALSYVTCPTCRGPFIHRMLRMTAKMMGKPMTPLSYNHMPSCTLDLGGGNYGAQSGTIREMYGGGNFSIRSLPVRTEAYKTLIVNLDFSGMEEMISLAACSEPLWRN. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06075 233 Gene3D - 33 116 - -
Seca4g06075 233 MobiDBLite consensus disorder prediction 1 54 - -
Seca4g06075 233 FunFam Homeobox-leucine zipper protein HDG1 31 118 - -
Seca4g06075 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 232 IPR042160 -
Seca4g06075 233 Coils Coil 108 128 - -
Seca4g06075 233 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Seca4g06075 233 SMART HOX_1 43 106 IPR001356 GO:0003677
Seca4g06075 233 Pfam Homeodomain 45 100 IPR001356 GO:0003677
Seca4g06075 233 CDD homeodomain 45 103 IPR001356 GO:0003677
Seca4g06075 233 SUPERFAMILY Homeodomain-like 39 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06075 Seca-Chr4 118832932 118834011 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06075 5 231 Homeobox Transcription Factor Family AT4G04890 45.736 1.43e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g06075 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06075 K09338 - cave:132171744 232.261