Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06073 ATGGATTCTCAGCCACGACAAGAGCAAGAGCAAGAGCAACAACAACAGGTGTGCCCTCACCTAGATGACAAGCAAAGGAAAGCCTTGGGTGATGCGCTCGGGCTCGACCTTTTGAAAGTCAAGTTTTGGTTCCAGAACAAGCGTACCCAAGTGAAGGCTCAACAAGAACACCATGAGAATGCTCTTCCTAATGGTGAGAATGAAAAGCTTCGTGCTGACAATGCGAGGTGCAAGGAGGCACCGAGTCATGCTACATGCCCTACCTGTGGAGGGCCTTCTGTTGGTGAAATGTCCTTTGACGAACAACACTTGAGAATTGAGAATACCCGATTAAGAGAAGAGATTCAAAGGATGTCGGGAATGACAGTGAAAATGATGGGAAAGCCCGAGACTCCGCTCTCTTACAATCACATGACTTTGTGCACGCTTGATCTTCGGGGTGGTAATTATGGAGCACAGTCAGGCACGATTGCAGAAATGTATGGTGGTGGTAACTTTCTCCTAAGGTCACTCCCTGTTCCTATGGAAGCTGAGAAAACCTTGATTGTGGACCTTACTATGGAAAGGATGTCGAGAATGACAGCGAAAATTATGGGAAAGCCTGTGACACCGTTCTCTTACAATCACATGCCTTCGTGCACGCTTGATCTTGGGGGTGGTAACTATGGAGCACAGTCAGGCACGATATGGGAAATGTATGGCGGTGGTAACTTTCTCATAAGGTCACTCCTTGTTACTACGGAAACTGAGAAAACCTTGATTGTGGACCTTGCTGTTTCCGGAATGGAAGAATTGATAAACTTGGCTGCCTCTAGTGAGCCTTTATGGGTCGTGAGCAACCTTTGTTTTGAGATTCTCAATGAAAGTGAATACTCAAGGACTTTCCCTGGGGGAATGGGTCCAAAACCTTTGGGGTATATAACAGAAGCTTCTTGGGATTTCGTGGTGGTTATCATGAATCATATGAACCTCGTTGAGATCCTTAAGAATATTTCAGCTGAGTTTCAGGTTCCATCACCGCTTGTTCCGACTCGTGACAACTATTTCATAAGGTACTGTAAGCAACAACTTGGTGGTGCGTGGACGGTGGTTGATGTTTCCATGGAAAATCTGCAACTTGGTGGTGCAATCCCTGTATACCGAAGACGACCCTCTGGTTGTATAATTGAAGAATTGCCAAATGGTTACTTAGAGGTTACATGGATTGAGAATGTGGAAGTGGATGATAGAGTAGTGCATGATCTCTATAAGCTTTTAGTTAATTATGGCCTTGCCTTTGGAGCTAAACAGTGGTTAACAGCCTTAGATAGACTATGCGAACGTATTTCTAGTTCAATAACCACCAACATACCACCAGGGAATATTTCTGTGATCACAACTTTAGAGGGGAGGAAAGGTATGTTGAAGCTGGCTGAGAGAATGATATTTAGCTTTTGTACTTGTGTTGGTTCTTCTACAGCACATGCTTGGACACCCCTTCCCCCAACTGGTTGTGATGATGTAAGGGTCATGACAAGAAAGAATAACGGTGAACCTGGCAGACCTGCTGGTATTATTCTCAATGCTGCAACCTCTTTCTGGCTTCCAATTCAGCCAAAGAGGTGTTTTGAATTCCTTCGAAATGAAAACTCAAGGCACGAGTGGGATATTCTATCCAACGGGATTGTAGTTCAAGAACTGGCACACATAAAAATGGTCGTCATCCTGGAAACTGTTTATCTTCGTTTCGAGTCAATTGGGGGTGATCCAGATTATGTTGCCCTGCTGCCCTCGGGCTTTGTTATTCTTCCTGATGGGCCTATGGAAAACGATGGGCCCATTGTTGATATTGGAACTGGAGGTTGCCTACTAACAGTTGCATTTCAGATATTGGTTGATACACTTCCAAAAGCCAAACTATCTCTTGGTTTTGTCACCACTGTTAGCACTTTGTTGAAGTGCACAGTTGAACGGATCAAAGCTGCAGTTATGTCCACACAACAACATAACTGCACAGCCATCAAATAG 2007 0.4459 MDSQPRQEQEQEQQQQVCPHLDDKQRKALGDALGLDLLKVKFWFQNKRTQVKAQQEHHENALPNGENEKLRADNARCKEAPSHATCPTCGGPSVGEMSFDEQHLRIENTRLREEIQRMSGMTVKMMGKPETPLSYNHMTLCTLDLRGGNYGAQSGTIAEMYGGGNFLLRSLPVPMEAEKTLIVDLTMERMSRMTAKIMGKPVTPFSYNHMPSCTLDLGGGNYGAQSGTIWEMYGGGNFLIRSLLVTTETEKTLIVDLAVSGMEELINLAASSEPLWVVSNLCFEILNESEYSRTFPGGMGPKPLGYITEASWDFVVVIMNHMNLVEILKNISAEFQVPSPLVPTRDNYFIRYCKQQLGGAWTVVDVSMENLQLGGAIPVYRRRPSGCIIEELPNGYLEVTWIENVEVDDRVVHDLYKLLVNYGLAFGAKQWLTALDRLCERISSSITTNIPPGNISVITTLEGRKGMLKLAERMIFSFCTCVGSSTAHAWTPLPPTGCDDVRVMTRKNNGEPGRPAGIILNAATSFWLPIQPKRCFEFLRNENSRHEWDILSNGIVVQELAHIKMVVILETVYLRFESIGGDPDYVALLPSGFVILPDGPMENDGPIVDIGTGGCLLTVAFQILVDTLPKAKLSLGFVTTVSTLLKCTVERIKAAVMSTQQHNCTAIK. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06073 668 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 579 656 IPR042160 -
Seca4g06073 668 CDD START_ArGLABRA2_like 251 440 - -
Seca4g06073 668 SMART START_1 256 441 IPR002913 GO:0008289
Seca4g06073 668 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g06073 668 ProSiteProfiles 'Homeobox' domain profile. 1 54 IPR001356 GO:0003677
Seca4g06073 668 Gene3D - 3 67 - -
Seca4g06073 668 SUPERFAMILY Homeodomain-like 16 63 IPR009057 -
Seca4g06073 668 SUPERFAMILY Bet v1-like 248 443 - -
Seca4g06073 668 Pfam Homeodomain 14 52 IPR001356 GO:0003677
Seca4g06073 668 SUPERFAMILY Bet v1-like 462 653 - -
Seca4g06073 668 ProSiteProfiles START domain profile. 247 444 IPR002913 GO:0008289
Seca4g06073 668 Pfam START domain 328 441 IPR002913 GO:0008289
Seca4g06073 668 SMART HOX_1 4 58 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06073 Seca-Chr4 118776913 118784519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06073 6 656 Homeobox Transcription Factor Family AT4G04890 46.496 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g06073 START 7.9e-27 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06073 K09338 - cave:132171744 614.379