Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06049 ATGTCAGACATGGCTCCTCAAACAAAGTATGATGTTTTTGTTAGTTTTCAGGGCGAGGACATCCGTGATGGGTTTCTCAGCCATTTGATTGAGCCTTTTAATCGAAAGAAAATCAAAGCCTCTATAGATGATAAACTTCAGTGTGGAGATGAAATATGGTCATCACTTGTTGGAGCAATTGAAGGATCATTCATTTTGTTGATCATATTCTCACAACACTATGCTTCTTCACGTTGGTGTTTGGAAGAACTTGTGAAAATACTTGAGTGCAGAAAGAAACATAAACGCACTACAATACCTGTTTTCTACCATGTAGATCCCACAGATGTACGACATCAAATCGGGAGTTATAAAAATGCATTGGCTGGACATGAAAATAATTATAATTCAACTAAGGTGGAAACCTGGAGAGATCCTTTAAAGGAATCTGCTAATTTAGTAGGAATTAAGTCCTCGTATTTTACTTATGTGGAAATGAGGATTAGTTGTATGAAAGTTCTCATTGTTCTGGATGATGTCAATGATCCAGATCAACTTGAAATTCTAGTTGGAGATCATGATTGGTTTGGATCAGGTAGTAGAATCATTATAACTACCAGAGATAAGCAAGTACTTGCTAAAGAAGTTGATGATATATATGAGAGGGTGGTCAATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTCGAGGAAAAGATAAGGAAATATGGGAAAGTCAACTAGACAAACTTAAAAGAATGCCAAGTAAAAAAGTCCATGATGTAATGAGATTGAGTTATGATGATCTAAATAGCAAAGAGCAAAAGATTTTTCTAGATCTTGCTTGTTTCTTTAGTGGATTGAATTTGAAATTGAACCATATAAAAGTTTTGTTGAAAGATTTTGAGAATGATAATTCAATGTCGGATGGGTTAGAAAAGCTAAAAGATAAAGCTCTTATATCCATTTCTGAAGACAATTTTGTGTCCATGCATGATATTATACAAGAAATGGGTTGGGAGATTGTTCGTTGTGAATCTAGTGAAGACCCTGGACGGCGTAGTCGATTGTGGGATCCCAATGACATTTATGAAGTATTAAAAAATGACAAGGGTACAAAGGCTATTAGAAGCATAAGGATGCAGTTGTCAACAGTTAGGAAGCTCAAGTTAAGCCCTCTTATATTTACTAAGATGACTAAACTACAATTTTTGTATATTCCTAGCAAATATGATCAAGATGGCTTGGATCTTCTTCCTGAGGGGCTTCAATCTATGCCTTCTGAACTAAAATATCTTTGTTGGATGCATTACCCTCTGAAATCCTTGCCAGAGAATTTTTCTGCTGAAAAACTTGTTATATTGAACTTGTCATATAGTGGAGTAGAAAAACTGTGGAATGGAGTGCTGAATCTAGTGAATTTTAAAGAAGTTAATCTCTTTTTCTCGAGATTCCTAAAGGAGTTGCCAAACTTTTCAAAAGCTACAAATCTTGGAATGTTGGATGTCCATTTTTGTGTAAGCAATATCCATTTAAGCTCCCTCACTTATCTCAATCTTAAATCTTACACAAGTATAAGGATATTCTCAATTGCATCAAAGAATATGGTAGAATTGGATTTAGGATCCATGGATATGAATGCATTGTCAAAGCAAGCTATTGGAGGTCAAAGCAAGCTTGATGGTCAAAGTCAAAGCAAGCTTGAAATTTCACATCTAGTAAACTATGACATTGAGAGCTTGCCATCATGCTTTAAGAATCTTACAAGACTCCAATATCTAGACATAAGATATTTCCAGGAGCTTGAAACTTCACCAGAGCTTCCCCTGTCCCTTGAAATTCTACTTGCTCAAGAGTGCAGATCATTGGAGACTGTATTTTTCCCTTCAGTAGCTGATCAATTCAAGGAAAACAGAAATAAGGGCTTCATTTTTAGCTTTGTTGTTGGTAAGGTCCAATCATATCGTGAGGAAATGGAATTTATCATCACTATTAGGTGTGGAGAGGATAAGGTTATAAAGGACAGTTTCGTAATGTACATGCGATGTCCAGTCAACCCTATTGCAGCAGATCATGTGTTTGTGATGTACAACCAACAATGTTCTCGTTTACTAAATAAAACAACCAAAAGCTGGACACAATTTCAAATTGAAGTTGGAACCGATCCACCATTCAACATTTCACTAAATTATTCAATCGAGATGGTGTTAAAAGGGTTTGGGGTTAGCCCAATATGCACCACATCATATCAGGATTTCATTCAACAAAATGGAATAGTATGA 2277 0.357 MSDMAPQTKYDVFVSFQGEDIRDGFLSHLIEPFNRKKIKASIDDKLQCGDEIWSSLVGAIEGSFILLIIFSQHYASSRWCLEELVKILECRKKHKRTTIPVFYHVDPTDVRHQIGSYKNALAGHENNYNSTKVETWRDPLKESANLVGIKSSYFTYVEMRISCMKVLIVLDDVNDPDQLEILVGDHDWFGSGSRIIITTRDKQVLAKEVDDIYERVVNYAKGIPLVLKVLGHLLRGKDKEIWESQLDKLKRMPSKKVHDVMRLSYDDLNSKEQKIFLDLACFFSGLNLKLNHIKVLLKDFENDNSMSDGLEKLKDKALISISEDNFVSMHDIIQEMGWEIVRCESSEDPGRRSRLWDPNDIYEVLKNDKGTKAIRSIRMQLSTVRKLKLSPLIFTKMTKLQFLYIPSKYDQDGLDLLPEGLQSMPSELKYLCWMHYPLKSLPENFSAEKLVILNLSYSGVEKLWNGVLNLVNFKEVNLFFSRFLKELPNFSKATNLGMLDVHFCVSNIHLSSLTYLNLKSYTSIRIFSIASKNMVELDLGSMDMNALSKQAIGGQSKLDGQSQSKLEISHLVNYDIESLPSCFKNLTRLQYLDIRYFQELETSPELPLSLEILLAQECRSLETVFFPSVADQFKENRNKGFIFSFVVGKVQSYREEMEFIITIRCGEDKVIKDSFVMYMRCPVNPIAADHVFVMYNQQCSRLLNKTTKSWTQFQIEVGTDPPFNISLNYSIEMVLKGFGVSPICTTSYQDFIQQNGIV. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06049 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 279 IPR027417 -
Seca4g06049 758 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Seca4g06049 758 SUPERFAMILY L domain-like 381 626 - -
Seca4g06049 758 SMART till_3 9 146 IPR000157 GO:0007165
Seca4g06049 758 Gene3D Ribonuclease Inhibitor 359 633 IPR032675 -
Seca4g06049 758 Pfam Leucine Rich Repeat 449 467 IPR011713 -
Seca4g06049 758 Gene3D - 198 269 IPR042197 -
Seca4g06049 758 SUPERFAMILY "Winged helix" DNA-binding domain 255 366 IPR036390 -
Seca4g06049 758 Pfam TIR domain 9 142 IPR000157 GO:0007165
Seca4g06049 758 ProSiteProfiles TIR domain profile. 8 143 IPR000157 GO:0007165
Seca4g06049 758 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 165 - -
Seca4g06049 758 Gene3D - 7 170 IPR035897 -
Seca4g06049 758 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 157 618 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06049 Seca-Chr4 118007359 118011259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06049 155 634 WRKY Transcription Factor Family AT4G12020 31.215 4.37e-55 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06049 - - gmx:100796110 569.311