Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06045 ATGGGAGTTCCAGAGAAAGACCCTCTTTCCCAATTGAGTTTACCTCCTGGATTTCGGTTTTATCCCACCGACGAGGAGCTCCTCGTTCAGTATCTATGCCGCAAGGTAGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATCGACTTGTACAAGTTCGACCCCTGGGTTCTTCCAAGCAAAGCGATTTTCGGAGAGAAAGAATGGTACTTTTTCAGTCCTAGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCTGGGTACTGGAAAGCCACAGGAACCGATAAGATCATTACCACCGAAGGTAGAAAAGTTGGTATCAAAAAAGCCCTCGTTTTCTATGTTGGCAAAGCTCCTAAAGGCACCAAAACCAATTGGATTATGCATGAGTATCGCCTTCTAGACTCTTCGCGAAAGAACACTGGCACCAAGGTAAATTCACCCTTGGATGACTGGGTTTTGTGTCGGATATACAAGAAGAACTCAAGCGCACAAAAAGCTGCATCAAACGGCGGCGTTTCGAGCAAAGAGTACACTCAATACAGCAACGGTTCGTCCTCCTCGTCGTCGTCCCACCTCGATGACGTTTTGGAATCGCTGCCTGAGATTGACGACCGGTGCTTCATGCTGCCACGTGTCAATTCGCTGAGAACGCTGCAGCAGCGGGAGGAGGAGAAGCTCAATCTTCAGAACCTCGGTGCAGGGAGTTTGATGGATTGGGCTAACCCAGCGGTTCTGAATACGGTTTCGGAGTTCGGTTCGGCGAACCAAGTGGTTCAGGGGCAAGCTCAGGGGATGGTGAATTTCGGTGGCTGTAATGACCTTTATGTCCCTTCGGTTCCTTCGCTGTGCAACGTGGACTCGTCAGAGAAGATGGGGAAACCGGTGGAGGAGGAGGTTCAGAGCGGTGTGAGAACCCAACGGGTCGAGAATTCCGGGTTTTTCCAGCGCGGCCCGAATGATTTCACGCAGGGATTCTCAAATTCGGTGGACCCGTATGGGTTCAGGTACCCGGTTCAACCGGTTGGGTTTGGGTTCGGGCAATGA 1065 0.5117 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNTGTKVNSPLDDWVLCRIYKKNSSAQKAASNGGVSSKEYTQYSNGSSSSSSSHLDDVLESLPEIDDRCFMLPRVNSLRTLQQREEEKLNLQNLGAGSLMDWANPAVLNTVSEFGSANQVVQGQAQGMVNFGGCNDLYVPSVPSLCNVDSSEKMGKPVEEEVQSGVRTQRVENSGFFQRGPNDFTQGFSNSVDPYGFRYPVQPVGFGFGQ. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06045 354 Gene3D NAC domain 23 172 IPR036093 GO:0003677|GO:0006355
Seca4g06045 354 FunFam NAC domain-containing protein 72-like 23 171 - -
Seca4g06045 354 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Seca4g06045 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 205 - -
Seca4g06045 354 MobiDBLite consensus disorder prediction 172 199 - -
Seca4g06045 354 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Seca4g06045 354 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06045 Seca-Chr4 117808776 117810672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06045 1 281 NAC Transcription Factor Family AT3G15500 62.585 1.54e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g06045 NAM 7.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06045 - - tpra:123895211 561.992