Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06024 ATGGATGGAGCTATTGAGGCAAATCAAGGCAACAACATTTTGTCTTTAGAGTTACAACAGACACTTGAAGTCCCATTTGATTTAAATAAAGCCCCATTTGATTTAAATGAGTTTCCATTAGAAGAAGAAAATCTTTCTAATTATTTGGATACAATATTTGAACCATTAGAAGAGGAAAATCCTTCTAATGCTTCAAATATAATATTTGAACCATTTTTTGGTCAATGTTTCTCAAACGAGGAAAAAACTTTGGAATTTTATCAGAGATATGCTAAGAAACATGGGTTTTCAGTTCGAAAGGCTCGCTTTGATAAAAGCAAAAATGGAGAAGTTAGAAGGTGTGATTTCTTTTGCCATCGCGCAGGAAGGAAACCACTCAAAATTGTTTACCCATCAAAGGATCAACGTCATCGATCATCGGCACACTATGACTGCAAGGCTCATATGTGA 450 0.3489 MDGAIEANQGNNILSLELQQTLEVPFDLNKAPFDLNEFPLEEENLSNYLDTIFEPLEEENPSNASNIIFEPFFGQCFSNEEKTLEFYQRYAKKHGFSVRKARFDKSKNGEVRRCDFFCHRAGRKPLKIVYPSKDQRHRSSAHYDCKAHM. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06024 149 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 46 149 - -
Seca4g06024 149 Pfam FAR1 DNA-binding domain 85 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06024 Seca-Chr4 117209721 117210170 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g06024 FAR1 4.9e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06024 - - mtr:112420875 107.457