Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06014 ATGCAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGCGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCAGCAACTCTGGACACTTGGCTCCCAGAGCAAGTTGCTTTCATTCATTCGATGGGAAATGAGAAAGCTAATAGTTACTGGGAAGCAGAACTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCGAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCCAAAAACACCATCTGGACCAAGGGAAGAGAAAACTCCTTCACATTGGCAGAGGCCTGTGGAAAGAAGTGGGCATGGTTATGCAACTGTTTCTGAGAATACATTTGAGGAAAGGAAAAAAGTCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAACACCTGAGCAGGTAACCCCTGTTACCAAACCACACCATGTTGAGAAAGTGGAGCCAGTAGCACCACAACCACAAGCTGAAACTTCAAAGCAGGCTACAAACACAACTAAAAATACCCCTCCAAAAGTTGACTATGCTACAGATCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGTTCTGAAGCAGCTGGTACTACTGCTGATGATAATAACTGGGCAGGCTTTCAGTCTGCTGCAGAGGTGTCAACAGCGGACAAAACTGGTCTGCCAAAAGCAGTCGAGAGTACTCCCCAGTCTGCATCTGGAATTGAGGATCTGTTTAAAGATTCACCTTCTGTGACACCAAGCTTAGCTCCATCACAACCACAGAAAGATGTGAAACATGATATCATGAGCCTCTTTGAGAAGAGCAATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGCTAGCACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAATTCTACTGGTGGAGATCCCAAGTATCCTGCTAGCATGCTACAACCTAGGCCCAATGTTCCTGTCCAAAATTGGCCAGCTACTGGGTACCCAATTTCTGGAGTAATGCCCATGGGCGGTCAGGGAGATCTGCAGAAACTTATGCAGGATCAGACTAGGAACATGACTCCAGCACATGCAGCCGGGAGCTCTGTTCAATATTCACCAAATGGTTTCTATGCTATGGGGCAAGCGGGTCCAGTCAATGGTATGATGACAATGGGAACGAGTAAACCTCCGTCAACAACTCCAGTGTCATCATCCACTTCGAAGTCAGCAAAGGATTATGATTTTTCCTCCTTGACTCAAGGGATGTTTGCGAAACAGTGA 1392 0.4504 MQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPKTPSGPREEKTPSHWQRPVERSGHGYATVSENTFEERKKVQPSNAIPATRISVPAPPKTPEQVTPVTKPHHVEKVEPVAPQPQAETSKQATNTTKNTPPKVDYATDLFNMLSMDGPSENGSEAAGTTADDNNWAGFQSAAEVSTADKTGLPKAVESTPQSASGIEDLFKDSPSVTPSLAPSQPQKDVKHDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAANSTGGDPKYPASMLQPRPNVPVQNWPATGYPISGVMPMGGQGDLQKLMQDQTRNMTPAHAAGSSVQYSPNGFYAMGQAGPVNGMMTMGTSKPPSTTPVSSSTSKSAKDYDFSSLTQGMFAKQ. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06014 463 MobiDBLite consensus disorder prediction 108 131 - -
Seca4g06014 463 MobiDBLite consensus disorder prediction 226 245 - -
Seca4g06014 463 MobiDBLite consensus disorder prediction 254 300 - -
Seca4g06014 463 CDD ArfGap 4 102 - -
Seca4g06014 463 PRINTS HIV Rev interacting protein signature 13 32 IPR001164 GO:0005096
Seca4g06014 463 PRINTS HIV Rev interacting protein signature 53 74 IPR001164 GO:0005096
Seca4g06014 463 PRINTS HIV Rev interacting protein signature 32 49 IPR001164 GO:0005096
Seca4g06014 463 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 2 463 IPR044520 GO:0005096
Seca4g06014 463 Gene3D Arf GTPase activating protein 1 114 IPR038508 -
Seca4g06014 463 MobiDBLite consensus disorder prediction 196 214 - -
Seca4g06014 463 SMART arf_gap_3 2 115 IPR001164 GO:0005096
Seca4g06014 463 Pfam Putative GTPase activating protein for Arf 3 108 IPR001164 GO:0005096
Seca4g06014 463 MobiDBLite consensus disorder prediction 108 216 - -
Seca4g06014 463 FunFam stromal membrane-associated protein 1 isoform X1 1 113 - -
Seca4g06014 463 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 115 IPR001164 GO:0005096
Seca4g06014 463 MobiDBLite consensus disorder prediction 428 463 - -
Seca4g06014 463 SUPERFAMILY ArfGap/RecO-like zinc finger 2 109 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06014 Seca-Chr4 117004436 117013382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06014 4 108 C2H2 Transcription Factor Family AT4G05330 49.558 1.99e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06014 K12486 - gmx:100789910 721.85