Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06010 ATGATGTTATCAGCTTCGCCATCTACCCTTGCGAGAAGCTCTCTAGAAGAAATGCTTGAATCTCTTCGCCGGAGAGATGAAGAGGAGAAGCCGAAGGACCTGCCGCCGGCATTGCCGGCGAGGCCAACGTCGAGAGCTCGGTTACCGTCGGCGAGAAGGTCTTTGCCTAATAGCCTCAAGGTTGATGGAGGGAATGAGAAGGGCAAAGGGCACAAGAGGAAAGGTAGTTTTGGACACAAGAAGATGAAGATGGATTTGGAATCACCTTACGTGGCTGAATCAGAAGAGAAAATTAGTGAAAGATCATCACCGGGTCCCGTTTCAACATCTGCTGAGGATTCTGCTGCTTCTGTAGCTCCACCTTCCCGGGAATTGGAAGATGACAATGTTGCTTATTTCATAAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAGGTGGGAACTGGGAAAGATACAGTCGACTTCAGGAGAGGAAGCATTGGTTTCACTCTCAGATGGAAATATTATGCAAGTTGCCAGAACAGAGCTCCTACCAGCTAATCCTGATATTCTAGAGGGTGTAGATGATCTTATACAGCTCAGTTATTTAAATGAGCCCTCAGTTCTTCACAATCTTAAATTCAGATATTCTCAAGATATGATTTACAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCCTTCAAAGATGTACAGATTTATGGAAATGATTATATCTCAGCTTATAGGCAGAAATTTGTTGATAGTCCTCATGTTTATGCTATGGCATATGCAGCTTATAATGAGATGATAAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGATCTGGGAAAACAGAGACAGCAAAATTTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGTTAGAAAATGAAGTTCTTCAGACAAATTTTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATGACAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTCAGCACTCTGGGGAAAATTTGTGGGGCTAAAATTCAAACCTGTAAGCATGTTCAATCAAGAGTTGTTCAATTGGCCAGTGGCGAGAGGTCATATCATATATTTTATCAACTTTGTGCTGGATCTTCACCTGATCTTAAAGAGAGACTGAATCTTAGAGTGGCCAGCGAATATAAATATCTTAATCAGAGTGACTGCATGGCAATTGATGGTGTTGATGATGCTAAAAAGTTTCATAGGCTGATGAAAGCATTGGATGTTGTTCAGATGTGCAAAGAGGATCAAGAGGCGGTCTTTAAGATGCTCACTGCGATATTATGGCTGGGAAATATATCATTCCAAGTTAATGATAATGAAAATCATGTTGAGGTCGTGAATAATGAAGCTGTAACCAGTGCTGCTTTGCTCATGGGTTGCAGTTCTCAGGAGTTAATGACAGCATTATCTACCCATAAAATCCAAGCTGGCAAGGATACTATTACCAAAAGATTAACGTTGCAGCAGGCAATAGATGCAAGAGATGCTTTAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTAAACGACGTACTGGGAGATCCATAAGTATCCTTGATATTTATGGATTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTTTGTATAAATTATGCTAATGAGAGGCTTCAACAACATTTCAATCGGCACCTGTTTAAACTTGAGCAGGAGGACTACGAATTAGATGGCGTTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGCTTGGATCTCTTTGAGAAGAAGCCTTTGGGACTGTTCTCTTTGTTAGATGAGGAATCAAATTTCCCCAGGGCCACTGATATAACACTTGCCAACAAACTTAGGCAGCACCTGCACACTAATCGTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTCAGTGTTTGTCATTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATCCACTGCCTTCTGATTCCATTCAACTACTGTCATCATGTAGTTGTGAATTGCTGCAGTTGTTCTCCAAGATGCTTAACACATCTCAGAAGCAATCAAATTCCCTGCACATAGGTGCTCTGGATTCACAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACACCTCACTTTATTCGGTGTATAAAGCCAAATACTAAGCAACTTCCTGGCATATATGATGAAGATCTTGTCCTGCAACAGCTCAAGTGTTGTGGAGTTTTGGAGGTTGTACGGATTTCAAGGGCTGGATATCCTACTCGAATGACACACCAAGAGTTTGCCAGAAGGTACGGGTTTCTGCTTTCTGAGGCCAATTCATCTCACGATCCATTGAGCATCTCAGTTGCTGTTTTGCAACAATTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTGGAGGATAGGAGAAAACAGGTTTTGCAGGGAATAGTTGGGGTTCAAAAATGCTTTCGTGGCCATCGAGCTCGCAATTATTACCATGAACTTCAGAATGGAGTGACAACTTTACAATCATGTAATGCTGTTGTTCGTGGAGAAATTGCAAGAAGGAAATATGGTGTTATGGTAAAGTCTTCCATAACTATTTCTTCTGAAAAAATTGAGGAGATAGAGGCAATCATAATGCTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGGCATGCCTTGAATAAGTTTAAGAAATATCCTGAAAATGCAAAACCTCGGCGAAAGTCACGTGTGAAAATGCCAGAAGTCAAGGATGTGTCCAATGAACGGTTCCAGAATCTGCCTTCAGCTTTGGCAGAACTCCAAAGGCGGGTTGTCAAGGCTGAAGCAACCATAGAGCAAAAGGAAGAGGAAAATGCTGAATTGAGGGAACAGCTAAAACAATTTGAGAGAAGGTGGATTGAATATGAGACAAAGATGAAATCAATGGAGGAGATGTGGCAAAAACAAATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAGAAGCAGCCTTGCTTCTGTGAATGCCACTGGTCAACATGTAAGACATGATGTTGCATCATCTTTTTGCTATGATTCTGAAGATGCTACTTCCATGGGATCTCGAACTCCTCGAACGCCTGGTGCCAGCACACCTTTGAAGTATTCTAGCAGTCTTTCTGAAGTTGCAACAAGGAGAGATGCTAATGGTACTTTGCCTACAGTCAACAATCTAATGAAGGAATTTGAGCAGTCCAGACAGACCTTTGATGATGATGCCAAAGCTCTTATTGAAGTTAAAACCGGGCAATCCGCGAGCACGAATTCCATTGAAGAACTCAGGAGACTCAAACATAGGTTTGAGGGGTGGAAGAAAGAATACAAGCTTAGATTAAGAGAGACAAAAGCAAGACTTTATAAATTGGGGAATTCAGAAATGGATAAAAGCCGGAGAAAATGGTGGGGGAAGTTAAGTTCTAGAGGACTATAG 3603 0.4155 MMLSASPSTLARSSLEEMLESLRRRDEEEKPKDLPPALPARPTSRARLPSARRSLPNSLKVDGGNEKGKGHKRKGSFGHKKMKMDLESPYVAESEEKISERSSPGPVSTSAEDSAASVAPPSRELEDDNVAYFIKKKLHVWCRQPKGRWELGKIQSTSGEEALVSLSDGNIMQVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLKFRYSQDMIYSKAGPILIALNPFKDVQIYGNDYISAYRQKFVDSPHVYAMAYAAYNEMIRDEVNQSIIISGESGSGKTETAKFAMQYLAALGGGSCGLENEVLQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSTLGKICGAKIQTCKHVQSRVVQLASGERSYHIFYQLCAGSSPDLKERLNLRVASEYKYLNQSDCMAIDGVDDAKKFHRLMKALDVVQMCKEDQEAVFKMLTAILWLGNISFQVNDNENHVEVVNNEAVTSAALLMGCSSQELMTALSTHKIQAGKDTITKRLTLQQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGVDWTKVDFEDNQVCLDLFEKKPLGLFSLLDEESNFPRATDITLANKLRQHLHTNRCFKGERGRAFSVCHYAGEVLYDTNGFLEKNRDPLPSDSIQLLSSCSCELLQLFSKMLNTSQKQSNSLHIGALDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNTKQLPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLSEANSSHDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDRRKQVLQGIVGVQKCFRGHRARNYYHELQNGVTTLQSCNAVVRGEIARRKYGVMVKSSITISSEKIEEIEAIIMLQSVIRGWLVRRHALNKFKKYPENAKPRRKSRVKMPEVKDVSNERFQNLPSALAELQRRVVKAEATIEQKEEENAELREQLKQFERRWIEYETKMKSMEEMWQKQMASLQMSLAAARSSLASVNATGQHVRHDVASSFCYDSEDATSMGSRTPRTPGASTPLKYSSSLSEVATRRDANGTLPTVNNLMKEFEQSRQTFDDDAKALIEVKTGQSASTNSIEELRRLKHRFEGWKKEYKLRLRETKARLYKLGNSEMDKSRRKWWGKLSSRGL. 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06010 1200 Gene3D - 863 913 - -
Seca4g06010 1200 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g06010 1200 PRINTS Myosin heavy chain signature 315 342 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 PRINTS Myosin heavy chain signature 547 575 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 PRINTS Myosin heavy chain signature 272 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 Gene3D Myosin VI head, motor domain, U50 subdomain 428 536 - -
Seca4g06010 1200 Gene3D - 559 748 - -
Seca4g06010 1200 MobiDBLite consensus disorder prediction 80 100 - -
Seca4g06010 1200 MobiDBLite consensus disorder prediction 17 35 - -
Seca4g06010 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 943 IPR027417 -
Seca4g06010 1200 ProSiteProfiles Myosin motor domain profile. 188 858 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 MobiDBLite consensus disorder prediction 1 122 - -
Seca4g06010 1200 MobiDBLite consensus disorder prediction 101 116 - -
Seca4g06010 1200 SMART MYSc_2a 182 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 MobiDBLite consensus disorder prediction 1073 1094 - -
Seca4g06010 1200 ProSiteProfiles IQ motif profile. 923 952 IPR000048 GO:0005515
Seca4g06010 1200 Pfam Myosin head (motor domain) 190 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 FunFam Myosin IE heavy chain 428 536 - -
Seca4g06010 1200 Gene3D - 371 427 - -
Seca4g06010 1200 SMART iq_5 882 907 IPR000048 GO:0005515
Seca4g06010 1200 SMART iq_5 922 944 IPR000048 GO:0005515
Seca4g06010 1200 SMART iq_5 859 881 IPR000048 GO:0005515
Seca4g06010 1200 FunFam Myosin heavy chain 371 427 - -
Seca4g06010 1200 ProSiteProfiles IQ motif profile. 862 889 IPR000048 GO:0005515
Seca4g06010 1200 FunFam Unconventional myosin-XIX 559 748 - -
Seca4g06010 1200 CDD MYSc_Myo8 202 846 IPR036022 -
Seca4g06010 1200 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 135 184 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca4g06010 1200 Pfam IQ calmodulin-binding motif 864 881 IPR000048 GO:0005515
Seca4g06010 1200 Pfam IQ calmodulin-binding motif 925 942 IPR000048 GO:0005515
Seca4g06010 1200 Coils Coil 982 1030 - -
Seca4g06010 1200 Gene3D - 792 859 - -
Seca4g06010 1200 Gene3D Kinesin motor domain 187 791 IPR036961 -
Seca4g06010 1200 PANTHER MYOSIN 181 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06010 Seca-Chr4 116861335 116871957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06010 1 1194 Myosins gene family AT5G54280 63.438 0.0 1565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06010 K10357 - gmx:100801876 1929.07