Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06003 ATGTGTGTCCTACTCACTTCTTCAAAATCGAATCTTCACCCTCTCTCAAAATCTGTGCTCACCACTTCCCCCACCATGAACACTCCTCACTCACATGTTTCACACATGCACTACCACTACACTACGGACGACGACGAAGGAGAAGACGACGTCGTTATAGACTACGCGGAGGAGAATGAAGAAAAAAAAGGAGGAGAAGCCAAGGTGGTGTTGTGTGGGCGAAGATACGGTAATTGGTCTCTGGGGCGGGTACTATTTGACCCGAAAGGGAAATGGGTTCAAGAATGGAACAGAGTGTTTCTGCTGGTGTGCACCATGGGTTTGTTCGTCGACCCTCTCTTCTTCTACGCCCTATCCATAAGTGACACGTGTATATGCCTCTTTGTCGACGGTTGGCTCGTTATAACCGTCACTGTTATCCGCTGCATGACCGACGCGTTGCACCTTTGGAACATGTGGTTGCAGTTCAACATCGCTAAACACTCCAACTTTCCCACCATCCATACTCATAGGGGTTTCTTCTTTGACCTCTTTGTCATCCTTCCTATACCTCAGATTGTGATATGGGTTGCAATTCCGTCTCTGCTAGAGAAAGGATCAATTACGTTGGTGATGACAGTGTTCTTAATAATGTTCCTGTTTCAATACCTTCCCAAAATTTATCACTCAGTGTGCACCTTGCGTCGCATGCAAAACCTCTCTGGCTACATTTTCGGGACCGTTTGGTGGGGTATCGCTCTCAACATGATCGCATATTTTGTCGCCTCCCATGCAGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGGGCAGCGAAGTGCTTGGAAGAGCAATGTGGGAAAACAGCTGGTTGTGGATTAAGAACACTGTGTTGCAAAGAAGCAATATACTATGGAACGAGTAGCATGGTGAAAGAGAAGACAAGGTTGGCATGGGCAGAGAACAGGGAAGCGAGGTCTACATGTCTAGCTAGCTCAGACAATTACGATTATGGAGCTTATAAATGGACTGTTCAACTTGTAGCAAATGATAACCGATTGGAAAAGATTCTCTTGCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGAAGCCTCGAGAGCACGACGGAACGGATAGAAGTGGTTTTCAACATTATTGTGTTGACTAGTGGCCTCCTTCTAGTCACTATGTTAATAGGAAACATCAAGGTACATCCAACAGCTACAACATCAAAGAAGCAAGCTATGAAATTGAAGATGAGGAACATAGAATGGTGGATGAGCAAAAGGCGTTTGCCACAAGGGCTCAGGCAGCGTGTCCGTAACTACGAGAGGCAGTGTTGGGCTGCCATGCGTGGGGTTGATGAATGCCAAATGATCAAAAATCTCCCTGAGGGGCTTAGAAGGGACATCAAGTACCATCTATGTTTGGATTTGGTCAGACAGGTATATATGGTTCAAAAAGATTTTGTTCAGGTACCTCTATTTCAGCATATGGATGAGTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACAATAACCAGAGAGGGAGACCCGGTTCAAAGAATGATATTTGTGGTAAGGGGTCACCTTCAGAGCAGCCAAGTCCTAAGAGATGGGGTGAAAAGTTGTTGCATGTTAGGCCCTGGAAATTTCAGTGGGGATGAGCTCCTTTCATGGTGTTTGAGAAGGCCATTTATAGAACGCCTTCCACCATCATCATCCACTTTGATCACACTTGAAACCACAGAGGCATTTGGGCTTGAAGCAGAGGATGTGAAGTATGTGACACAACATTTTAGGTACACTTTTGTGAAGGAAAAGGTTAAGAGAAGTGCTAGGTATTACTCACCTGGATGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTATAAGCACCGTTTGACTTTGACATCTTTGTCCTTTATAAGGCCTAGGAGACCTGTCTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGCCTCTATACGGCTATGTTAACCTCACCAAAGCCTAATCAAGATGATTTTGACTTTTCATGA 2067 0.4567 MCVLLTSSKSNLHPLSKSVLTTSPTMNTPHSHVSHMHYHYTTDDDEGEDDVVIDYAEENEEKKGGEAKVVLCGRRYGNWSLGRVLFDPKGKWVQEWNRVFLLVCTMGLFVDPLFFYALSISDTCICLFVDGWLVITVTVIRCMTDALHLWNMWLQFNIAKHSNFPTIHTHRGFFFDLFVILPIPQIVIWVAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCTLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLEEQCGKTAGCGLRTLCCKEAIYYGTSSMVKEKTRLAWAENREARSTCLASSDNYDYGAYKWTVQLVANDNRLEKILLPIFWGLMTLSTFGSLESTTERIEVVFNIIVLTSGLLLVTMLIGNIKVHPTATTSKKQAMKLKMRNIEWWMSKRRLPQGLRQRVRNYERQCWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVYMVQKDFVQVPLFQHMDELVLENICDRVKSLVFTKGETITREGDPVQRMIFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCTSMEEDRLRLYTAMLTSPKPNQDDFDFS. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06003 688 SUPERFAMILY cAMP-binding domain-like 406 604 IPR018490 -
Seca4g06003 688 ProSiteProfiles cAMP/cGMP binding motif profile. 490 600 IPR000595 -
Seca4g06003 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 75 684 - -
Seca4g06003 688 Gene3D Helix hairpin bin 405 471 - -
Seca4g06003 688 FunFam cyclic nucleotide-gated ion channel 4 488 606 - -
Seca4g06003 688 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Seca4g06003 688 Pfam Ion transport protein 96 397 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g06003 688 Gene3D Jelly Rolls 488 606 IPR014710 -
Seca4g06003 688 CDD CAP_ED 490 596 IPR000595 -
Seca4g06003 688 Pfam Cyclic nucleotide-binding domain 510 598 IPR000595 -
Seca4g06003 688 SUPERFAMILY Voltage-gated potassium channels 87 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06003 Seca-Chr4 116612274 116620839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06003 73 686 Ion Channels AT5G54250 74.766 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06003 K05391 - gmx:100800795 1065.06