Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05993 ATGACAAAGTCTACTTCTAATGAAAAGAATGGATTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATTGATTACATTCAGAAACATGGACATGGGAAATGGCGAACCCTTCCCAAGAATGCAGGACTAAAACGATGTGGAAAGAGTTGCCGGCTTCGCTGGGCTAACTACTTGAGGCCTGATATAAAGAGAGGAAAATTCTCACTTGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATAGCTGCTAACTTGCCAGGGAGAACAGATAATGAGATAAAGAATTATTGGAATACCCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCACGCCTTGATGTTATTCAACTTGCCTCCATTCTGAACTCATCTTTATACAATTCGCCCCAATTTAACTATCCTGCTCTTTTTGGGATTGGAAGATTGGCAAATCCAAGCCAGCTACAGCTGCTAAATTTACTCACTGCTCTGCTTTCATGTCAGAGCAGAAACATAGATATTTCTAATAATAATTACCAACAACAAAACCAACTTGGTGGTAGTAACCCTCTATTGCAAAATCAATCCCAATGCTCTCAACCAATGCAACTTGATTCTATCCAAGCCTTTCAACAAAACCAACCCCATTTATCAGTTCAAGAAAACAATTGCACTACATCTAATACATTGCCTTTGGAATCCCAACTCATGAAAACAAAATTACAGAATCAAATCTCTCCAATTGCTAATACTCCTTTTAGCCACCAAAACACCTTACCAAATTTGTGGCAGTATAACAATGAAGTTCACATATCAGATCAACAACAACCTGAATCATCAGTTACAGAATGTTTCTCTTTGCCCAAGTTCAACTCCATCATCAACAATCTCTTGGAAAGTCAGGGTAATTTGTGTAACGAGGGAATGCCAAATTTCAATTTAAGCTCACTGTTATCATCCACATCTTCATCTTCTAGCCCGAGTACTTTGAATTCATCATCTTCCACTACATTTGTCAATGGAACTACTGAAGATGAAAGGGACACTTATGGAAGTAACTTGTTGATGTATAACATCTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1143 0.3858 MTKSTSNEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVIQLASILNSSLYNSPQFNYPALFGIGRLANPSQLQLLNLLTALLSCQSRNIDISNNNYQQQNQLGGSNPLLQNQSQCSQPMQLDSIQAFQQNQPHLSVQENNCTTSNTLPLESQLMKTKLQNQISPIANTPFSHQNTLPNLWQYNNEVHISDQQQPESSVTECFSLPKFNSIINNLLESQGNLCNEGMPNFNLSSLLSSTSSSSSPSTLNSSSSTTFVNGTTEDERDTYGSNLLMYNISNGLNDSGLL. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05993 380 CDD SANT 69 112 IPR001005 -
Seca4g05993 380 SMART sant 66 114 IPR001005 -
Seca4g05993 380 SMART sant 13 63 IPR001005 -
Seca4g05993 380 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05993 380 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g05993 380 CDD SANT 16 61 IPR001005 -
Seca4g05993 380 FunFam Transcription factor MYB39 69 130 - -
Seca4g05993 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g05993 380 MobiDBLite consensus disorder prediction 329 356 - -
Seca4g05993 380 Gene3D - 69 116 - -
Seca4g05993 380 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g05993 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
Seca4g05993 380 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05993 380 Gene3D - 11 67 - -
Seca4g05993 380 FunFam MYB-related transcription factor 13 66 - -
Seca4g05993 380 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05993 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05993 Seca-Chr4 116321180 116323461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05993 1 380 MYB Transcription Factor Family AT4G21440 46.056 6.95e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05993 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05993 K09422 - gmx:100820398 542.347