Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05976 ATGCTAAGAGTTCGTGTAATCCAAAGTTGGAAAGTTCCACAATTTGAGAAGCCAAATGAGTTCTCAAGTATGGAGATATTGTTATTTGATGAAAAGTGTGACAAAATTCAAGGAACCATCAACAAGCCTCTAATTGACCACTTTGAGCCAATGATAAATGAAGGGAGTGCCTATATCGTTGAAAAATTTTCCGTCGCAAAAAACGATAAAAACTTCCCCTCAACAAAGCATCATTACAAAATTCGTTTCATGAAGATCACAAAAGTGGCTGAATGTCGGGCATACAACATTCCAATTAATCATTTCCAATTTGTTTCATTCCCTGATATTCTCAGTGGAAAGGAACAAGAACAATTGTTTGATGTTATTGGTCATGTTGCAGAAAGATATGACATCAAAGAGACTGAATCAAAAGAAAAAAAGATTACATTAATGGATGTGCTTTTGGAGGATTTGGAGAACAATAAGTGA 471 0.3482 MLRVRVIQSWKVPQFEKPNEFSSMEILLFDEKCDKIQGTINKPLIDHFEPMINEGSAYIVEKFSVAKNDKNFPSTKHHYKIRFMKITKVAECRAYNIPINHFQFVSFPDILSGKEQEQLFDVIGHVAERYDIKETESKEKKITLMDVLLEDLENNK. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05976 156 Gene3D - 95 156 IPR012340 -
Seca4g05976 156 Gene3D - 1 94 IPR012340 -
Seca4g05976 156 SUPERFAMILY Nucleic acid-binding proteins 2 92 IPR012340 -
Seca4g05976 156 Coils Coil 145 156 - -
Seca4g05976 156 CDD RPA1_DBD_A_like 1 89 - -
Seca4g05976 156 Pfam Domain of unknown function DUF223 26 113 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05976 Seca-Chr4 116043787 116046863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05976 2 127 Core DNA Replication Machinery Family AT4G19130 26.357 4.47e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05976 - - tpra:123914810 144.821