Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05968 ATGATGAACTATAGAAATATGTGTATTTGCTCCTTCATTTTATTCTTGTTCGTAAGAACATGCACCTCATTAGACAGCATGACTCCAAGTCAATCCATCCGAGATGGTGAGAGTTTAGTTTCAGCCGGTGGAACTTTTGAAGTTGGATTCTTCAGCCCAGGGAACTCAAAAAGTCGATACTTGGGAATATGGTACAGAGTATCTCCTATGACAGTGGTATGGGTAGCCAACCGAGACAAACCACTCAATAATACCTCTGGAGTTCTAGAAGTCAACGATCAAGGAGTTCTTCTGCTCCAAAATGGTTCTGGCAGTAGCAGCAACAGCACTGTGTGGTCGTCCAATGTAACAAAGCAAGCAGACAATATTAATCCAATTGTACAACTATTGGACTCTGGAAATCTTCTTGTGAGAGAGGGAAGTGATATACTATGGCAGAGTTTTGATTATCCTTGTGATACTCTATTGCCAGGAATGGAGCTTGGATGGAATCTAGAGACTGGCCATGATAGGTTTCTATCATCTTGGAAAAATGGAGATGATCCTGATCTTGGAGACTATGTGTTTAAAATAGACTATAGAGGCTATCCACAAGCAGTTGAATTGAAGGGAACCGCCATAATGAACAGAGCAGGGCCATGGAATGGCCTAACCTTTTCAGCAAATCCAATTCAAACAAGAACTCCACAATATGATTCTGACTTTGTTGTGAATCAAAAGGAGATTTTTTTTAAGTCCCAACTCTTAGATAAATCTGCTTTATTCAGATATATATTGACCCCTTCAGGGAATAGGCAGATTTTCCATTGGAAAAGTGAAACAAGCAGCTGGGAGCTGATGTGGTCTCAACCATCAGTTCAATGTGACAATTATGCGTTGTGTGGTGCAAACTCTATTTGCAATTCTATCAACAACCCTCAGTGTGCTTGCCTCAAAGGGTTTGTAAGCAAATATCCAGCTGAATGGAATGTGTCAAATTGGTCTGATGGCTGTGTTCGGATCACTCCATTGAGTTGTGGCAAAGATGGGTTCAGGAAGTACACAGGCATGATTCTACCTGACACATCTTCTTCTTGGTTTAATAAGACCATGGTCCTGCAGGAATGTGAAGATTTATGCCTGCAAAACTGTTCCTGTACAGCATACGCGAATATGGATATAAGTGGTGGAGGAAGTGGCTGCTTGCTTTGGTTTCATGATCTGATTGACATGAGGCAATTCCCTCAAGCTCAAGGGGGACAGGACATTTATATACGATTCCCTCTTTCGGAGCTACAAGATCACTATCAGGACGAGTTAGGCAAGAAGCTTGCAAGCATCATCAGTGCCTGTACCGTGTTCATCGTGTGCATAATACTTGGACTGACCATATGTGTATGGAAAAAGAAACTTGCGAAGCCAGTTTTAGGGATGAGAAATCTATTTTATCAAATTCACCACAACTATAAATTAAGGAGACTAGAGGTAGATCCACCAGCATTTGACTTGCCTCTCATTGTTAAAGCCACTAATAACTTTTCGGGTACCAACAAACTTGGAGAAGGTGGTTTTGGATCAGTATACAAGGGTACACTAATGAATGGGCAAGACATAGCTGTGAAAAGGCTTTCAAAGAACTCTGATCAGGGGTTGGAGGAATTTAAAAATGAAGTTTCATTGATTGCCAAACTCCAGCACCGTAATCTTGTGAATCTTCTTGGTTATTGCATTCAAGGGGGAGAGAAAATGTTGATCTATGAATACATGTCAAACAAGAGCTTGGACTACTTTATTTTTGGTTTGTGA 1785 0.409 MMNYRNMCICSFILFLFVRTCTSLDSMTPSQSIRDGESLVSAGGTFEVGFFSPGNSKSRYLGIWYRVSPMTVVWVANRDKPLNNTSGVLEVNDQGVLLLQNGSGSSSNSTVWSSNVTKQADNINPIVQLLDSGNLLVREGSDILWQSFDYPCDTLLPGMELGWNLETGHDRFLSSWKNGDDPDLGDYVFKIDYRGYPQAVELKGTAIMNRAGPWNGLTFSANPIQTRTPQYDSDFVVNQKEIFFKSQLLDKSALFRYILTPSGNRQIFHWKSETSSWELMWSQPSVQCDNYALCGANSICNSINNPQCACLKGFVSKYPAEWNVSNWSDGCVRITPLSCGKDGFRKYTGMILPDTSSSWFNKTMVLQECEDLCLQNCSCTAYANMDISGGGSGCLLWFHDLIDMRQFPQAQGGQDIYIRFPLSELQDHYQDELGKKLASIISACTVFIVCIILGLTICVWKKKLAKPVLGMRNLFYQIHHNYKLRRLEVDPPAFDLPLIVKATNNFSGTNKLGEGGFGSVYKGTLMNGQDIAVKRLSKNSDQGLEEFKNEVSLIAKLQHRNLVNLLGYCIQGGEKMLIYEYMSNKSLDYFIFGL. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05968 594 SUPERFAMILY Protein kinase-like (PK-like) 480 593 IPR011009 -
Seca4g05968 594 Gene3D Hepatocyte Growth Factor 337 419 - -
Seca4g05968 594 Gene3D Phosphorylase Kinase; domain 1 472 581 - -
Seca4g05968 594 Pfam Protein tyrosine and serine/threonine kinase 509 591 IPR001245 GO:0004672|GO:0006468
Seca4g05968 594 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 591 - -
Seca4g05968 594 ProSiteProfiles Protein kinase domain profile. 506 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05968 594 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Seca4g05968 594 Pfam PAN-like domain 339 404 IPR003609 -
Seca4g05968 594 Pfam D-mannose binding lectin 71 177 IPR001480 -
Seca4g05968 594 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Seca4g05968 594 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 420 - -
Seca4g05968 594 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Seca4g05968 594 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Seca4g05968 594 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Seca4g05968 594 SMART ntp_6 339 420 IPR003609 -
Seca4g05968 594 CDD PAN_AP_plant 335 421 - -
Seca4g05968 594 SMART blect_4 30 151 IPR001480 -
Seca4g05968 594 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 581 - -
Seca4g05968 594 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Seca4g05968 594 CDD B_lectin 30 151 IPR001480 -
Seca4g05968 594 Gene3D - 20 148 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05968 Seca-Chr4 115816513 115820428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05968 438 592 Receptor kinase-like Gene Family AT4G23190 50.000 1.45e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05968 S_locus_glycop 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05968 - - gsj:114373347 730.709