Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05967 ATGGAAAGCTTCAAGGGGCTAGTTTTGTGCTTTCTTCTGTTCCACTTCATACCAAGCTTCAACACGCTGGAAACCATTGTTCCTGGACAATCCGTCAAAAATAATGAGACTCTAGTTTCAGTAGATGGGACTTTTGAAGCGGGATTCTTCAACTTCGGAGATCCAAATAGCCAATATTTTGGCATATGGTACAAGGGTCTTTCTCCAAGAACAGTTGTGTGGATAGCAAACAGAGATGCCCCACTGGCAAGCTCCTCAGGAGTTTTGAATGTCACTGATGGAGGAAATCTTGTTATTCTTAATGGCACAGGGGATATAGTTTGGTCCTCCAATGCATCAACAACTGCAAAGAAGCCAATTGTGCAGCTCTTGGAGAATGGAAACCTTGTTGTGAAAGAAAAAAGCAACCCTGAGAATCTTCTGTGGCAAAGTTTTGATCTTCCTGGGGACACTTTGCTCCCAGGGATGAAAATTAGAAGTAACTTAGTAAGTGGTAATTATACATCTCTGGTATCATGGACAGACACACAAAATCCTGCTGGAGGTGTGTATTCATACCACATAGATACTCATGGTTTTCCTCAAGTAGTGATTACAAAGGGAAACACATTATTGTTCAGAGCAGGTTCATGGAATGGCAATCTTTTATCCGGAATTCCTTCTGAAACACTATACAAATCCTTTAATTTCTCCTTTGTGATAACTGAGCAGGAAGTTTCTTATGGATATGAACTCTTGAATCAGTCAATTATTTCAAGATACATGCTCACTTCAACAGGCCAAGTGGCACGTTACACGTTATCAGATCAGACAAAGAGTTGGCAGCTTTTCTTTGTTGGCCCTAGAGACCAATGTGATAATTATGCCATTTGTGGTGCAAATTCTAATTGTGATGTTAGTAACTCTCCAACATGTGAATGCCTTCAGGGTTTCATCCCCAAATCACAAGAAAAATGGAATTCACAAAAGTGGTCTGATGGGTGTGTGCGGAGAGTTAATTTAGATTGTGGCAACAGTGATGGCTTTCTGAAATATACAGGAATGAAGTTGCCGGACACGTCAACCTCATGGTTTAATAGGAGCATGAACCTTGAGGAATGTGAGAAATTCTGTCTGAAAAACTGCTCTTGCACAGCATATGCAAATTTAGATATCAGAAATGGTGGAAGTGGCTGCTTGCTTTGGTTTAATAACATTGTGGACATAAGGAAACTAACCTCTGGAGGACAAGACCTTTACATAAGAGTGGCAGCTTCAGAACTAGACAATGCTTTTTATCTCTCAGACGATGACAAGGACTTGAACAAGAAGCAGCTTGCAGGAATTCTGGTAGGTTGTTCTATGTTTATTGTGATTATGATAATACTGGGTGTGGCCATACTTCGGAGGAAGAAACAAGAGAAGCCAGGGAATAACCAAATATTTAGCTTTAAGAATCATACTGACAATAAAGAGAATGAAGAAGACATTGACATACCAATGTTTGATTTTTCAATCATATCTAATGCAACTAATAACTTCTCCTCTAATAACAAATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACATTGCCAAATGGAAAAGATATTGCCGTGAAGCGGCTTTGCAATAAATCAGGACAAGGACCAAAAGAGTTCATAAATGAAGTTATAATAATTGCCAATCTTCAGCACCGAAATCTTGTGAAACTTCTTGGCTGTTGCATTCAAGATGATGAGAGAATCTTGATTTATGAATTCATGATTAACAGAAGCTTGGACTGCTTTATTTTTGATCAAACTAGAAAAAGTATACTTCATTGGGCTCAACGCATCCAAATTATTTGTGGGATTGCTCGAGGACTTCTCTATCTTCATGTAGATTCTAGAGTAAGGATTATCCACAGAGATCTCAAGACCAGCAATATTCTTCTAGATGAAAATATGAATCCAAAAATATCAGATTTTGGTCTTGCTAGACCATTTCGGAGAGATGAAGCTGAATGGGAAACTAAGAGAGTAGTTGGAACTTATGGTTATATTTCCCCAGAGTATGCAGCCCGTGGGTTTATCTCAGTGAAATCTGATGTTTTCAGTTTTGGTGTTATTGTACTAGAGACAATTAGTGGAAAGAGGAACAGGGAATATTTTGACACTCATGATCTTGACCTTCTTGGACATGCATGGAGACTGTGGCGTGACAAAAAGCCATTGGAGCTGTTAGATGATTCTCTAGGCGATTCAATTTCTCTAGCTGAACCTGAAATATTGAGATGTATTCACATCGGGCTTTTATGTGTACAAGAGAGACCAGAGGATAGGCCAGACATGTCAACTGTAGTTCTAATGCTGAATGGGGAGAAACCATTGCCCAGGCCAAGGGAACCCGCCTTTTATCCACACCAGCTTGGCTCTTCATCAGGAGCTAGTCAGCTGCATACAACCAATGAAATTTCTATGACATTGTTACATGCAAGATAG 2466 0.3966 MESFKGLVLCFLLFHFIPSFNTLETIVPGQSVKNNETLVSVDGTFEAGFFNFGDPNSQYFGIWYKGLSPRTVVWIANRDAPLASSSGVLNVTDGGNLVILNGTGDIVWSSNASTTAKKPIVQLLENGNLVVKEKSNPENLLWQSFDLPGDTLLPGMKIRSNLVSGNYTSLVSWTDTQNPAGGVYSYHIDTHGFPQVVITKGNTLLFRAGSWNGNLLSGIPSETLYKSFNFSFVITEQEVSYGYELLNQSIISRYMLTSTGQVARYTLSDQTKSWQLFFVGPRDQCDNYAICGANSNCDVSNSPTCECLQGFIPKSQEKWNSQKWSDGCVRRVNLDCGNSDGFLKYTGMKLPDTSTSWFNRSMNLEECEKFCLKNCSCTAYANLDIRNGGSGCLLWFNNIVDIRKLTSGGQDLYIRVAASELDNAFYLSDDDKDLNKKQLAGILVGCSMFIVIMIILGVAILRRKKQEKPGNNQIFSFKNHTDNKENEEDIDIPMFDFSIISNATNNFSSNNKLGEGGFGPVYKGTLPNGKDIAVKRLCNKSGQGPKEFINEVIIIANLQHRNLVKLLGCCIQDDERILIYEFMINRSLDCFIFDQTRKSILHWAQRIQIICGIARGLLYLHVDSRVRIIHRDLKTSNILLDENMNPKISDFGLARPFRRDEAEWETKRVVGTYGYISPEYAARGFISVKSDVFSFGVIVLETISGKRNREYFDTHDLDLLGHAWRLWRDKKPLELLDDSLGDSISLAEPEILRCIHIGLLCVQERPEDRPDMSTVVLMLNGEKPLPRPREPAFYPHQLGSSSGASQLHTTNEISMTLLHAR. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05967 821 Gene3D Hepatocyte Growth Factor 333 414 - -
Seca4g05967 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 582 - -
Seca4g05967 821 CDD B_lectin 30 148 IPR001480 -
Seca4g05967 821 Gene3D - 20 145 IPR036426 -
Seca4g05967 821 SUPERFAMILY Protein kinase-like (PK-like) 489 779 IPR011009 -
Seca4g05967 821 Pfam PAN-like domain 336 402 IPR003609 -
Seca4g05967 821 SMART serkin_6 507 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05967 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 766 - -
Seca4g05967 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g05967 821 SMART blect_4 29 148 IPR001480 -
Seca4g05967 821 Pfam Protein tyrosine and serine/threonine kinase 510 777 IPR001245 GO:0004672|GO:0006468
Seca4g05967 821 Gene3D Transferase(Phosphotransferase) domain 1 583 785 - -
Seca4g05967 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Seca4g05967 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 416 - -
Seca4g05967 821 Pfam D-mannose binding lectin 71 173 IPR001480 -
Seca4g05967 821 Gene3D Phosphorylase Kinase; domain 1 480 582 - -
Seca4g05967 821 ProSiteProfiles Protein kinase domain profile. 507 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05967 821 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Seca4g05967 821 CDD PAN_AP_plant 332 417 - -
Seca4g05967 821 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Seca4g05967 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 178 IPR036426 -
Seca4g05967 821 CDD STKc_IRAK 513 781 - -
Seca4g05967 821 SMART ntp_6 337 416 IPR003609 -
Seca4g05967 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 145 - -
Seca4g05967 821 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Seca4g05967 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05967 Seca-Chr4 115717569 115721053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05967 429 796 Receptor kinase-like Gene Family AT4G23190 50.670 9.81e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05967 PK_Tyr_Ser-Thr 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05967 - - ccaj:109805721 1332.78