Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05966 ATGTGCAGTGGCTATCTACCGCCAGAGTATATAATTGATGGAGCTTACTCAACAAAATCTGATGTATTCAGCTTTGGTGTGTTAATATTGGAGATAGTGAGTGGGAAGAGAAATAAAGGATTCTGTCATCAAGATAATCTTATGGCGCATGCGTGGAGATTATTTACAGAAGACAAATGCTCTGAAATAATTGATGCACCAATAAGAGGGTCCTGCAATTTATCAGCAGTGCTAAGATCAATTCATGTGGGGTTACTATGTGTGCAACTAAGTCCAGATGAGAGGCCAAGCATGTCATCTGTGGTTTTGATGTTGAGTAGTGAATCCAAACTGCCTCAGCCTAAAATGCCTGGATTCATTACAGAAAGAGAGCGGGTTGGGGACAGTTCTTCATCAAGCAGTTTTAAACCATTCTCAACTAATGAGATCACAGTCAGCCTAACGTATGGTCGTTAA 456 0.4057 MCSGYLPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNKGFCHQDNLMAHAWRLFTEDKCSEIIDAPIRGSCNLSAVLRSIHVGLLCVQLSPDERPSMSSVVLMLSSESKLPQPKMPGFITERERVGDSSSSSSFKPFSTNEITVSLTYGR. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05966 151 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 147 - -
Seca4g05966 151 Gene3D Transferase(Phosphotransferase) domain 1 2 117 - -
Seca4g05966 151 Pfam Protein tyrosine and serine/threonine kinase 5 103 IPR001245 GO:0004672|GO:0006468
Seca4g05966 151 SUPERFAMILY Protein kinase-like (PK-like) 4 119 IPR011009 -
Seca4g05966 151 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05966 151 Pfam Domain of unknown function (DUF3403) 106 151 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05966 Seca-Chr4 115712363 115713102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05966 3 151 Receptor kinase-like Gene Family AT4G23140 44.025 2.72e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05966 PK_Tyr_Ser-Thr 2.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05966 - - gmx:100795006 226.098