Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05963 ATGGAGATCCAGCACTGTCAATCGATGAAAAATCTTTCTTTTTTGTTTGTTCTTACTAAGATTCTGTTGCTCTTTTTTCATATCACAAGTGCAGCTGACTCCATATCTCGATTTCAATCACTTTCTGAAGGCAATACCTTAGTTTCTGAAGATGGAAGCTTTGAATTGGGTTTCTTCAGTCCAGGAAGTTCTGCAAACCGTTACTTAGGAATATGGTACAAGTCAATACCAGTTAAGACTATTGTCTGGGTTGCCAATCGAGCCAACCCAGTGAAGGACAATTCTAGCATGTTGCAAATAAACAGTGAGGGGAATCCTGTGCTTGTTAACCAGAATGGGACTGTGGTTTGGTCAGCAGATACCAAAAAGAAGGTTCTGAATCCCATTTTTCAGCTCTTAAATTCAGGGAATTTAGTACTGAGAGAAGAGAAAGACGAAGATGATGAAAACTACTTGTGGCAAAGCTTTGATTATCCTGGTGATACACTGTTACCTGGAATGAAGCTGGGTTGGGACTTAAAAACTGGTCATGAAAGGCGTGTATCTGCTTGGAAAAACTGGGATGATCCATCACCTGGTGATTTTACTTGGGGTATATCACTTGAAGGTTTTCCTCAAGTAATGATGTGGAAAGGCTCAAAATTGTACTACCGTGGTGGTTCATGGAATGGCCTTGGATTCACTGGTGCCCCAGAATTGAAGACCAATCCAGTTTTTGACTTTAAATTCGTTTCCAACAAGGATGAGGTGTACTACACATATACCCTCAGGAATAAGTCAATGATTTCAAGGATTGTTATGAATCAAACTAGTTCTACTCGCCAGAGGTACGTATGGATCCAAGAAGCTCAAAGTTGGAGGCTTTATGCATCTGTGCCTAGAGATAACTGTGATTTTTATAATCTTTGTGGACCATATGGAAATTGCATCATAGGTGACTCTCCAGTGTGTCAGTGTTTAGCAGGGTTTAAGCCAAAGTTACCAGGAAATTGGGACATGATGGACTGGACTCAAGGGTGTTTACTCACTGAACAATGGAGCTGTGAGGATAAGAGTCAACATGGGTTTTTGAAACTTAGTGGGCTGAAATATCCAGATACTTCACATTCTTGGGTTAATGAGAGTATGGATCTCAATGAATGCAGGAATAAATGCTTGGAGAATTGTTCCTGTAAAGCTTATGCAAATTCAGATGTTAGTGATGGAGGTAGTGGCTGTTTGATATGGTTCGGTGATCTCAGGGATATTAGACAGTTTTCTGGTGATGGTCGAGATCTATATATACGAACCAAAACTTCAGAGTTAGCCGGGAAAGAAGAACATAACATGAAGGTGGTAGCAATAATCATCAGTGTTGCCTCAGTTCTTATAGTGATTCTGGTTTTTTACTATGTTTGCAAGAGAATGAGAAAGTTCGGAGAGGATGAAAAAGAGAAGAACTTGATGATAGAGAATAATGAAGAAGGAGGGGAAGAAGACTTGGAGCTTCCTATATTTGATCTTGCTACGATTGTCAAAGCAACTGATGGTTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGGTTGTATACATGGGTACCCTAACAGATGGAAAAGAAATTGCTGTGAAGAGGCTCTCACAGAGTTCTGGACAAGGGTTTACTGAATTTAAGAATGAAGTCATATTGATTGCTAAACTTCAGCATCGAAACCTAGTCAAGCTTCTTGGTTGCTGCATTCAAGGAGAGGAGAAGATGCTAATCTATGAATACATGCCCAACAAAAGCCTAGACTCCTTTATCTTTGATCATACAAAATGCAAAGTTTTGGATTGGTCCAAACGCTTCAAAATTATTTGTGGAATTGCCCGAGGACTTGTGTATCTTCATCAAGATTCTAGGTTGAGGATAATACATAGAGACCTTAAAGCAAGCAATGTCTTACTTGACAATGAGTTGAACCCAAAAATATCTGATTTTGGCATGGCTAGAACTTTTGGGGGAGATCAGAGCGAAGGAAACACAAGGAGGGTGGTTGGAACATATGGTTATATGGCACCTGAATATGCCATTCATGGGCTATTTTCAGTAAAATCTGATGTCTTCAGCTTTGGTGTATTATTGCTGGAGATACTAAGTGGGAAGAAGAACAGAGGATTTTCCCATTCAAATAACAGTATAAACCTTATTGAGCATGCATGGAGATTTTGGAAAGAAAATAGGCTCATTGACTTGATAGATTCTTGTATGGAGAATTCATCTGATCTATCAGAAGCATTGCGTTGCATCCATATCAGTCTTCTATGTGTCCAACAACATCCTGATGATAGGCCAAACATGTCAAATGTAGTTGTGATGTTGGGCAGCGAGAGTTCCTTGCCTCAACCTAAGGAGCCTGCTTTCCTTATGGAGAAGTTCTTTCTTGAAGCAGATTCTTTTAGCAAGCATCAATTTTCTTCAACCAATGAAGTGAGCATTACCATATTAGAGCCCCGGTAG 2484 0.3977 MEIQHCQSMKNLSFLFVLTKILLLFFHITSAADSISRFQSLSEGNTLVSEDGSFELGFFSPGSSANRYLGIWYKSIPVKTIVWVANRANPVKDNSSMLQINSEGNPVLVNQNGTVVWSADTKKKVLNPIFQLLNSGNLVLREEKDEDDENYLWQSFDYPGDTLLPGMKLGWDLKTGHERRVSAWKNWDDPSPGDFTWGISLEGFPQVMMWKGSKLYYRGGSWNGLGFTGAPELKTNPVFDFKFVSNKDEVYYTYTLRNKSMISRIVMNQTSSTRQRYVWIQEAQSWRLYASVPRDNCDFYNLCGPYGNCIIGDSPVCQCLAGFKPKLPGNWDMMDWTQGCLLTEQWSCEDKSQHGFLKLSGLKYPDTSHSWVNESMDLNECRNKCLENCSCKAYANSDVSDGGSGCLIWFGDLRDIRQFSGDGRDLYIRTKTSELAGKEEHNMKVVAIIISVASVLIVILVFYYVCKRMRKFGEDEKEKNLMIENNEEGGEEDLELPIFDLATIVKATDGFSINNKLGEGGFGVVYMGTLTDGKEIAVKRLSQSSGQGFTEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDHTKCKVLDWSKRFKIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARTFGGDQSEGNTRRVVGTYGYMAPEYAIHGLFSVKSDVFSFGVLLLEILSGKKNRGFSHSNNSINLIEHAWRFWKENRLIDLIDSCMENSSDLSEALRCIHISLLCVQQHPDDRPNMSNVVVMLGSESSLPQPKEPAFLMEKFFLEADSFSKHQFSSTNEVSITILEPR. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05963 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 430 - -
Seca4g05963 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 773 - -
Seca4g05963 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 190 IPR036426 -
Seca4g05963 827 SMART serkin_6 511 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05963 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 586 - -
Seca4g05963 827 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Seca4g05963 827 Gene3D Hepatocyte Growth Factor 348 427 - -
Seca4g05963 827 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Seca4g05963 827 SMART ntp_6 351 430 IPR003609 -
Seca4g05963 827 Gene3D Transferase(Phosphotransferase) domain 1 587 793 - -
Seca4g05963 827 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Seca4g05963 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 156 - -
Seca4g05963 827 ProSiteProfiles PAN/Apple domain profile. 348 431 IPR003609 -
Seca4g05963 827 PIRSF SRK 5 827 IPR024171 GO:0004674
Seca4g05963 827 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Seca4g05963 827 SUPERFAMILY Protein kinase-like (PK-like) 494 785 IPR011009 -
Seca4g05963 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Seca4g05963 827 Pfam Protein tyrosine and serine/threonine kinase 512 781 IPR001245 GO:0004672|GO:0006468
Seca4g05963 827 CDD PAN_AP_plant 347 430 - -
Seca4g05963 827 ProSiteProfiles Protein kinase domain profile. 511 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05963 827 SMART blect_4 38 159 IPR001480 -
Seca4g05963 827 CDD STKc_IRAK 517 782 - -
Seca4g05963 827 Gene3D - 26 156 IPR036426 -
Seca4g05963 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 790 - -
Seca4g05963 827 Pfam D-mannose binding lectin 80 185 IPR001480 -
Seca4g05963 827 Pfam PAN-like domain 348 416 IPR003609 -
Seca4g05963 827 Pfam Domain of unknown function (DUF3403) 785 827 IPR021820 GO:0004674
Seca4g05963 827 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
Seca4g05963 827 CDD B_lectin 39 159 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05963 Seca-Chr4 115672450 115676220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05963 432 799 Receptor kinase-like Gene Family AT4G23230 53.514 5.02e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05963 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05963 - - cave:132173746 1115.52