Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05953 ATGTTGCATACTCTAATTATGTTAATCACTTTTTATTTTCTTTTTCCATACACAAGTGATGCCTTATTGTCACGGAGAATAAAGAAGCTTCAAATTACAGTGAGAAATAACCAAGATGTCCCAACTCAGGGGACTAACAACTCTGGTGTGTTGGATGATAGCTACTGTATCTATCACAGAGTTTGTGGTGCTAATGGGAATTGTGACCTTACAAAGGCACCAGCTTGTGTCTGTTTAGATGGATTCACACCCAACTCACCAAGTGGGTGGGATTCCCTGGACTATTCACAGGGGTGTCAAAGGGAAAAAGCATTGAATTGTAGTACAACAAATGTGTTCTTCAAATATGGTGTGTTCCAAGAACCTAGTGGCACATATTCTTTGTTAAATCAAAGCTTGGCAGAGGAAGATTGCAGAGCAAAATGCTTGAGTAACTGTTCTTGTGTGGCTTATACCATAAGGAATGGCTGCAAATTGTGGACTGGTGATCTATTTGATGTTAGGGTCATCAATGGAGGGCAGGATTTGTATATTCGAATGCCAGCAGCTTCAGAGCTAGGTGACCCTGAACCTGAAGAGGAAAATCATGGGAGTCATGAGGGAAAGATAGTGGGAGTAATAATTGGAAGTACTGTTGCTATAATTTCTGGGATGATCTTTTGTGGCTGCTACTTGCACAGGAGAAGGTCAAAGTTAAAAGTATTAGGAAATATAAGGACAAGTGAGATAGTTAGTCAAATCAATGAACAAGAAAAAGAAGATCTGGAGCTTCCATTATTTGACCTATCAAGAATAGCAGCAGCCACTGATAACTTTTCAGTCAATAACAAGCTAGGAGAAGGTGGTTTTGGACCTGTATACAAGGGTACATTAAATGACGGGCGAGAAATTGCTGTTAAGAGGCTTTCAAGTAGTTCTGGGCAGGGGCTAAATGAATTAAAAAATGAAGTAATACTGATAGCCAAACTTCAGCATCGTAATCTTGTAAAGCTTCATGGATGCTGCATCCAAGAGGGAGAGAAATTGCTGATATATGAATACATGCCTAACAGAAGCCTAGATTATTTTATTTTTGATCAAACACGTGGAAAAATCTTGGATTGGCCTAAGCGTTTTAAGATTATTTGTGGGATTGCTAGGGGCCTGCTATACCTTCATCAAGATTCTAGGCTAAGAGTCATACATAGAGATCTCAAAGCAAGTAATGTTTTGCTGGATAGTGAGATGGAGCCAAAGATCTCAGATTTTGGTTTGGCTAGAAGTTTTGTTGGTGGAGATCATAGCAAAGGAAATACAAATAGAGTAGTTGGTACTTTTGGATATATGGCTCCAGAATATGCTGTTAATGGACACTTTTCAGTGAAATCTGATGTTTTTAGCTTTGGGGTTTTGTTACTTGAGATAATAAGTGGGAAAAAAAATAGAGGGCTCTATTATCCAGATGACAACATGAACCTATTTGGACATGCATGGAATTTATGGGAGCAAGAAAGGTCTTTAGAATTGATCAATGAATGCCTCAAAGACTCTTGGACTTTATCTGAAGTACAACGCTGCATCCATATTAGCCTGTTGTGTGCACAGCAGCATCCCCAGGACAGGCCAAGTATGTCATCTGTGGTTCTTATGTTGGGTAGTGAAATTGAATTGCCTCAACCCAAATTTCCTAGTTTTGTCTTTGGAGAAGCTTCTGATGGCATAAGTTCCTCCTCTAGTAAAAATAAATTGAGCATTACAGAGCTTGAAGCTAGATGA 1755 0.3915 MLHTLIMLITFYFLFPYTSDALLSRRIKKLQITVRNNQDVPTQGTNNSGVLDDSYCIYHRVCGANGNCDLTKAPACVCLDGFTPNSPSGWDSLDYSQGCQREKALNCSTTNVFFKYGVFQEPSGTYSLLNQSLAEEDCRAKCLSNCSCVAYTIRNGCKLWTGDLFDVRVINGGQDLYIRMPAASELGDPEPEEENHGSHEGKIVGVIIGSTVAIISGMIFCGCYLHRRRSKLKVLGNIRTSEIVSQINEQEKEDLELPLFDLSRIAAATDNFSVNNKLGEGGFGPVYKGTLNDGREIAVKRLSSSSGQGLNELKNEVILIAKLQHRNLVKLHGCCIQEGEKLLIYEYMPNRSLDYFIFDQTRGKILDWPKRFKIICGIARGLLYLHQDSRLRVIHRDLKASNVLLDSEMEPKISDFGLARSFVGGDHSKGNTNRVVGTFGYMAPEYAVNGHFSVKSDVFSFGVLLLEIISGKKNRGLYYPDDNMNLFGHAWNLWEQERSLELINECLKDSWTLSEVQRCIHISLLCAQQHPQDRPSMSSVVLMLGSEIELPQPKFPSFVFGEASDGISSSSSKNKLSITELEAR. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05953 584 CDD PAN_AP_plant 105 181 - -
Seca4g05953 584 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 237 347 - -
Seca4g05953 584 Gene3D Phosphorylase Kinase; domain 1 233 347 - -
Seca4g05953 584 SUPERFAMILY Protein kinase-like (PK-like) 255 548 IPR011009 -
Seca4g05953 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Seca4g05953 584 Pfam PAN-like domain 107 167 IPR003609 -
Seca4g05953 584 Pfam S-locus glycoprotein domain 53 85 IPR000858 GO:0048544
Seca4g05953 584 ProSiteProfiles PAN/Apple domain profile. 107 181 IPR003609 -
Seca4g05953 584 SMART serkin_6 272 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05953 584 MobiDBLite consensus disorder prediction 564 584 - -
Seca4g05953 584 SMART ntp_6 108 180 IPR003609 -
Seca4g05953 584 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 348 552 - -
Seca4g05953 584 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 57 568 - -
Seca4g05953 584 MobiDBLite consensus disorder prediction 564 578 - -
Seca4g05953 584 Pfam Protein tyrosine and serine/threonine kinase 274 542 IPR001245 GO:0004672|GO:0006468
Seca4g05953 584 CDD STKc_IRAK 278 544 - -
Seca4g05953 584 Gene3D Transferase(Phosphotransferase) domain 1 348 552 - -
Seca4g05953 584 ProSiteProfiles Protein kinase domain profile. 272 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05953 Seca-Chr4 115337107 115340375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05953 253 558 Receptor kinase-like Gene Family AT4G23230 60.261 5.18e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05953 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05953 - - aip:107610641 751.895