Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05952 ATGCAAGGAAAGGGAAGCTTTCACTTCTTACCAATTAGTTTCTACCTTCTCTGTTTCATCTCAAAAATCTTTGCTGCAACTGACACCATTTCTCAGTCGCAGTCCCTCACTGAAAACCAGACCTTGGTTTCCAAAAACGGAAACTTTGAGCTTGGTCTCTTCACTCCCGGTACCTCTAGTAACCATTATTTGGGTATTTGGTACAAAGACATCCCAATCAAAACCGTTGTATGGGTTGCAAACAGAGAAAAACCCACCAAAGACTTCTCTGTTCTCTTGCTGATAAACACCACCACCCAAAACATACTTCTTCTTGGTCAGAACAAGAGTGTCCTATGGTCTATAACCCCATCAAGAAAAGCTCATAACCCAGTTCTTCAGCTCTTGGATTCTGGAAATCTTGTGCTAAAAGAGCAGAATAATGAGAATCCAGAGGAGTATCTATGGCAGAGCTTTGACTACCCTTGTGACACACAGTTACCAGGGATGAAGCTTGGGATAGACTTAAGGACTGGTTTTGATCGACGCCTCACAGCATGGAAGAATGAAAATGACCCTTCACCAGGAAACATGACATGGGGCTTGTATCTCACCAATTGGCCTGAACCCATGCAGTGGATAGGGTCAAGAAAGTACTTCAACAGTGGTCCATGGAATGGAATTCAATACAGTGGCAAACCAACTCTGAAGCCTCACCCAGTTTTTGATTTCATTTATTTCTCTGATGAGAATGAAGTGTACTACATGTTCCGCCTTGTGAACAACTCTGTCAAAGCTAGGATGGTGTTGAATCAAACCAGCTATGTTCGCCAGCATTCTGTTTGGGTGGAGGCAGAGCAGAGATGGAAGGTGTATGGTTCACTGCCAAGAGATTTTTGTGATAAGTATGGTGCTTGTGGTCCTAATGGGAATTGTGATGAGAACATGTTACCCAGTGCTTGTGATTGTTTGAAAGGGTTTAAGCCTAAATCACCTGTGGCATGGAATGGAATGGAGTATTCAGAAGGGTGTGTGCGTGATAGTAATAGACCACTGAACTGCAAAAATGATGGGTTTTTAAAGTATGTTAAGATGAAAGTGCCTGATACAGAATATAGTTGGTTGAACCAGAACATGACTCTGTTGGAATGCAGAGCTAAATGCTTGAGCAATTGTTCTTGTACTGCTTATACAAACTCAGATATCAGAGGAGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATCTTAATGACTTAAGGGTTCAACCGGATGCAGGGCAGGATCTGTATGTTAGAGTGCCTGCTTCTGAGTTAGAGACAAGCAATGGACACAAGGTCAAGATAGGAATTGCAGTTGGAAGCACCATTGCAATATTATGTGGCCTGCTCTTAGCTTTCTATTTCATATGCAAGAGAAAGGCCACTACAAAAATAATAGACCATTTCAAAGAAGAACAGGAGGAGGAAGATCTGGAGCTTCCATTGTTTGACCTATCAAGTATAGCTCATGCCACAGATAACTTTTCAATCAGCAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTATATAAGGGAACATTGGAAAATGGACAAGAAATTGCTGTTAAAAGACTTTCTAGAGGTTCTGGACAAGGGCTGAAGGAATTTAAAAACGAAATTAAATTAATAGCCAAACTTCAACACCGTAATCTTGTAAGGCTTCATGGATGTTGCATTCAGGATGAAGAGAAGTTGCTAATATATGAATACATGCCAAATAAAAGCTTGGATTTCTTTATATTTGATCAAACACAGAGAATGCTGTTGGATTGGCCTAAGCGCTTCAATATAATTTGTGGTGTTGCAAGGGGCCTTCTCTATCTTCATCAGGACGCCAGACTCAGAATCATTCATAGAGATCTCAAAGCAAGTAACATCTTACTTGATAATGAGATGAACCCAAAGATCTCAGACTTTGGCCTGGCTAGAATTTTAGGAGGAGACCAGAGTGCAGCAAATACACATAGGGTGGCTGGAACTTTTGGATACATGGCACCTGAATATGCAATAGATGGGAACTTCTCAGTGAAATCTGATGTCTTTAGTTTTGGCATTTTGTTGCTGGAGATAGTATCTGGAAAGAAAAATATAGGAAGTCATCAAGAGGAAAGCAAAAACCTTATTGGACATGCATGGGATTTGTGGATAGATGGGAGGCCTTTAGAGTTGATTGGTGAATATTCCAAAGATTCTTGCAATCTCTCTGAAGCACTGCGCTGCATCCATATCAGTCTTCTGTGTCTGCAGCAGCATCCACATGACAGGCCTAGCATGTCTTCTGTTGTTATGATGTTAGGTAGTGAAATTGGCTTGCCTCAGCCCAAACCACCAGCTCTATTTGTTGGAGAATATAAACATCAGGAATATTCTTCATCATATAAAAATGAGTTCCCTTCTGTCAATGAAGTGAGTATTTCACTTTTAGAAGCTCGTTAG 2454 0.4116 MQGKGSFHFLPISFYLLCFISKIFAATDTISQSQSLTENQTLVSKNGNFELGLFTPGTSSNHYLGIWYKDIPIKTVVWVANREKPTKDFSVLLLINTTTQNILLLGQNKSVLWSITPSRKAHNPVLQLLDSGNLVLKEQNNENPEEYLWQSFDYPCDTQLPGMKLGIDLRTGFDRRLTAWKNENDPSPGNMTWGLYLTNWPEPMQWIGSRKYFNSGPWNGIQYSGKPTLKPHPVFDFIYFSDENEVYYMFRLVNNSVKARMVLNQTSYVRQHSVWVEAEQRWKVYGSLPRDFCDKYGACGPNGNCDENMLPSACDCLKGFKPKSPVAWNGMEYSEGCVRDSNRPLNCKNDGFLKYVKMKVPDTEYSWLNQNMTLLECRAKCLSNCSCTAYTNSDIRGEGSGCALWFGDLNDLRVQPDAGQDLYVRVPASELETSNGHKVKIGIAVGSTIAILCGLLLAFYFICKRKATTKIIDHFKEEQEEEDLELPLFDLSSIAHATDNFSISNKLGEGGFGPVYKGTLENGQEIAVKRLSRGSGQGLKEFKNEIKLIAKLQHRNLVRLHGCCIQDEEKLLIYEYMPNKSLDFFIFDQTQRMLLDWPKRFNIICGVARGLLYLHQDARLRIIHRDLKASNILLDNEMNPKISDFGLARILGGDQSAANTHRVAGTFGYMAPEYAIDGNFSVKSDVFSFGILLLEIVSGKKNIGSHQEESKNLIGHAWDLWIDGRPLELIGEYSKDSCNLSEALRCIHISLLCLQQHPHDRPSMSSVVMMLGSEIGLPQPKPPALFVGEYKHQEYSSSYKNEFPSVNEVSISLLEAR. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05952 817 Gene3D - 20 152 IPR036426 -
Seca4g05952 817 CDD STKc_IRAK 507 771 - -
Seca4g05952 817 ProSiteProfiles Protein kinase domain profile. 501 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05952 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Seca4g05952 817 Pfam Domain of unknown function (DUF3403) 777 817 IPR021820 GO:0004674
Seca4g05952 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 152 - -
Seca4g05952 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 762 - -
Seca4g05952 817 SMART serkin_6 501 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05952 817 CDD PAN_AP_plant 344 427 - -
Seca4g05952 817 CDD B_lectin 33 155 IPR001480 -
Seca4g05952 817 PIRSF SRK 5 817 IPR024171 GO:0004674
Seca4g05952 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Seca4g05952 817 Gene3D Phosphorylase Kinase; domain 1 474 576 - -
Seca4g05952 817 Pfam D-mannose binding lectin 75 181 IPR001480 -
Seca4g05952 817 SMART ntp_6 347 426 IPR003609 -
Seca4g05952 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 779 - -
Seca4g05952 817 Pfam PAN-like domain 347 412 IPR003609 -
Seca4g05952 817 Gene3D Hepatocyte Growth Factor 345 420 - -
Seca4g05952 817 Gene3D Transferase(Phosphotransferase) domain 1 577 776 - -
Seca4g05952 817 Pfam S-locus glycoprotein domain 213 324 IPR000858 GO:0048544
Seca4g05952 817 Pfam Protein tyrosine and serine/threonine kinase 503 770 IPR001245 GO:0004672|GO:0006468
Seca4g05952 817 SUPERFAMILY Protein kinase-like (PK-like) 484 800 IPR011009 -
Seca4g05952 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Seca4g05952 817 SMART blect_4 33 155 IPR001480 -
Seca4g05952 817 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Seca4g05952 817 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05952 Seca-Chr4 115280232 115284239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05952 463 817 Receptor kinase-like Gene Family AT4G11530 53.719 3.64e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05952 PK_Tyr_Ser-Thr 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05952 - - aip:107610641 1146.34