Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05947 ATGGGTGTTACTGTTATGTCTTTCATGGGTATCATTTTCCTTGCTTATCTTATACTTGTCTATCATTCTCAAGTTTCCTTAGCAATTGACTCCATTTCTCAGTCCCTGGCCTTAAGAGATGATGGCAACACCACCTTAGTTTCCAAAGGTGGAACCTTTGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACTTGGGGATTTGGTACAAGAAAATCCCAATTCAAACAGTGGTTTGGGTTGCAAACAGGGTCAATCCAATCAATGATTCATCTGGCTGCATCTTAAGATTAAACTCTAGTGGGAGCCTTGTCCTCTCCCAGAATGACACTGTTGTTTGGTCTACAACCCCTCTGAGAAAATCAGAGAGTCCAATTGCCCTGCTCTTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAAAGAAGCAAACACAGAAGAAGCATACTTGTGGCAAAGCTTTGATTACCCAACTGACACTTTCTTACCAGAAATGAAGTTTGGTTGGGACTTCAGAATTGGTCTTAATAGAAATCTCACAGCTTGGAAGAGTCCTGATGATCCATCTCCAGGAGATTTCTCTTTTGGTATGGTGCCTCATAACTATCCTGATGCATATATGATGAAGGGTGGCAAAAAGTTCTACCGAAGTGGACCATGGAATGGCCTTCATTCAAGTGGTTCACCACAAGTAAGGACTAACCCAATTTATGACTTCAGGTTTGTTTTCAATAAGGATGAACTTTACTACACATATAGCCTCAAGAACTCATCTGTGATCTCAAGGTTAGTATTGAATGGAACAGCCAATGTTCGTAGACGTTATGTGTGGATTGAATCAGCACAAAGATGGGAGATTTATACATCAGTGCCATTGGACTTGTGTGACACTTATGCCCTTTGTGGAGCTTATGCAAATTGTATCATCACAGATTCACCAGTGTGCCAATGTATGGAAGGTTTTAAGCCTAAGTCACCTCAAGCATGGTACTCAATGGATTGGTCTCAAGGATGTGTCCGAAATAAGCCATTAAGCTGCAAGGATAACGAGAAAGATGGGTTTATGAAATTGAGTGGTCTGAAAGTGCCTGACACTACACATTCTTGGTTGGATGAGAAAATTGGTTTAGAGGAATGTAGGGCCAAGTGCTTGGATAACTGTTCTTGTATGGCCTATGCAAATGCAGATGTTAATGGAAAAGGGAGTGGCTGTGCTATGTGGTTTGGTGATCTAATTGACATTAGACAGTTTGCATCTGGAGGCCAGGATTTATATGTTAGAATGGATGCTTCAGAATTAGAACATGCCAATGATAGACACAAGAAGGAGGGAGTCATAGTGGCAGTAATTGTTTCTCTGGTAGTGACAGCAGTTTCGGGTATACTCATACTTGGTTGGTGTTATAAAAAGAAATCACGCACCAATATAAAAGAGAAATCAGAGTTCAGTATCAATAGAGATCATAACAGTGGAATGCAAGTGGATGATATGGATCTACCTGTCTTTGACTTGTCAACAATAGCTAAGGCCACTAGCAATTTCACAATTAACAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATCCTGGCAGATGGGGTGGAAATTGCTGTGAAGAGGCTTTCAACAAGTTCAGGTCAAGGATTGAACGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGCAATCTTGTGAAACTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAATACATGCCTAATGGTAGCCTGGACTCGTTTATTTTTGATCAGCAAAGAAGTGAATTACTAGACTGGTCAAAGCGTTTTCACATTATATGTGGAATTGCTAGGGGTCTACTCTATCTTCATCAGGATTCCAGACTAAGGATTATTCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAATCCCAAAATTTCAGATTTTGGTATGGCTAGAATTTTTGGAGGAGATCAGAAAGAAGGAAACACAAAGAGAATAGTTGGAACTTATGGTTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAGTCTGATGTTTTCAGCTTTGGAATTTTGTTGATGGAGATTATATCTGGGAAGAGAAGTAGAGGATATTATAATCAGAACCACAACCAGAATCTCATAGGCCATGCATGGAAACTCTGGAAAGAAGGAAGGCCACTAGAACTTATTGATAAAAGCCTAGATGACTCTTGTTTTCTATCACAAATATTGCATTGCATTCATATTAGTCTCTTGTGTGTTCAACAGTACCCTGAGGATAGGCCTGGAATGTCATGTGTGCTCCTAATGTTAGTGAGTGAGTTTGAATTGCCTGAACCCAAACAGCCAGGATTCTTTGGAAAAGATTCAAGTGAAGCAGATTCCTCCACAAGTAAGCAGCAACTGAGTTCAACAAATGAAATAACAATTACCCTTTTAGAAGCCAGATGA 2499 0.3986 MGVTVMSFMGIIFLAYLILVYHSQVSLAIDSISQSLALRDDGNTTLVSKGGTFELGFFTPGNSQKRYLGIWYKKIPIQTVVWVANRVNPINDSSGCILRLNSSGSLVLSQNDTVVWSTTPLRKSESPIALLLDSGNLVVRDEKEANTEEAYLWQSFDYPTDTFLPEMKFGWDFRIGLNRNLTAWKSPDDPSPGDFSFGMVPHNYPDAYMMKGGKKFYRSGPWNGLHSSGSPQVRTNPIYDFRFVFNKDELYYTYSLKNSSVISRLVLNGTANVRRRYVWIESAQRWEIYTSVPLDLCDTYALCGAYANCIITDSPVCQCMEGFKPKSPQAWYSMDWSQGCVRNKPLSCKDNEKDGFMKLSGLKVPDTTHSWLDEKIGLEECRAKCLDNCSCMAYANADVNGKGSGCAMWFGDLIDIRQFASGGQDLYVRMDASELEHANDRHKKEGVIVAVIVSLVVTAVSGILILGWCYKKKSRTNIKEKSEFSINRDHNSGMQVDDMDLPVFDLSTIAKATSNFTINNKIGEGGFGPVYKGILADGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNGSLDSFIFDQQRSELLDWSKRFHIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTKRIVGTYGYMAPEYATDGLFSVKSDVFSFGILLMEIISGKRSRGYYNQNHNQNLIGHAWKLWKEGRPLELIDKSLDDSCFLSQILHCIHISLLCVQQYPEDRPGMSCVLLMLVSEFELPEPKQPGFFGKDSSEADSSTSKQQLSSTNEITITLLEAR. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05947 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 223 IPR036426 -
Seca4g05947 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 778 - -
Seca4g05947 832 SUPERFAMILY Protein kinase-like (PK-like) 497 787 IPR011009 -
Seca4g05947 832 Gene3D - 25 156 IPR036426 -
Seca4g05947 832 CDD STKc_IRAK 522 787 - -
Seca4g05947 832 ProSiteProfiles PAN/Apple domain profile. 348 431 IPR003609 -
Seca4g05947 832 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Seca4g05947 832 CDD PAN_AP_plant 345 429 - -
Seca4g05947 832 MobiDBLite consensus disorder prediction 805 832 - -
Seca4g05947 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Seca4g05947 832 MobiDBLite consensus disorder prediction 798 832 - -
Seca4g05947 832 Pfam Protein tyrosine and serine/threonine kinase 517 730 IPR001245 GO:0004672|GO:0006468
Seca4g05947 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 430 - -
Seca4g05947 832 CDD B_lectin 42 159 IPR001480 -
Seca4g05947 832 Gene3D Transferase(Phosphotransferase) domain 1 592 794 - -
Seca4g05947 832 Gene3D Hepatocyte Growth Factor 347 428 - -
Seca4g05947 832 Pfam D-mannose binding lectin 79 185 IPR001480 -
Seca4g05947 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 591 - -
Seca4g05947 832 SMART serkin_6 516 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05947 832 PIRSF SRK 2 832 IPR024171 GO:0004674
Seca4g05947 832 SMART blect_4 37 159 IPR001480 -
Seca4g05947 832 Pfam PAN-like domain 348 416 IPR003609 -
Seca4g05947 832 Gene3D Phosphorylase Kinase; domain 1 466 591 - -
Seca4g05947 832 Pfam Domain of unknown function (DUF3403) 791 832 IPR021820 GO:0004674
Seca4g05947 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 156 - -
Seca4g05947 832 ProSiteProfiles Protein kinase domain profile. 516 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05947 832 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Seca4g05947 832 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Seca4g05947 832 SMART ntp_6 351 430 IPR003609 -
Seca4g05947 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05947 Seca-Chr4 115122855 115127583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05947 447 801 Receptor kinase-like Gene Family AT4G23230 53.652 4.53e-131 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05947 PK_Tyr_Ser-Thr 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05947 - - gmx:100778155 1411.36