Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05946 ATGCCGGATACAATCTTATTGACACACGATGGTCATGCGTTATCAACAATAGCTAAGGCCACTAGCAATTTCACAATCAACAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAGGGGAATCCTAGCAGATGGGGTGGAAATTGCTGTGAAGAGGCTTTCAACAAGCTCAGGTCAAGGATTGGACGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGCAACCTTGTAAAACTTCTTGAATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAATACATACCTAACGTTGGACTACATAAGTAG 324 0.4012 MPDTILLTHDGHALSTIAKATSNFTINNKIGEGGFGPVYRGILADGVEIAVKRLSTSSGQGLDEFKNEVKLIAKLQHRNLVKLLECCLEGEEKMLVYEYIPNVGLHK. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05946 107 ProSiteProfiles Protein kinase domain profile. 24 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05946 107 SUPERFAMILY Protein kinase-like (PK-like) 13 106 IPR011009 -
Seca4g05946 107 Pfam Protein tyrosine and serine/threonine kinase 25 106 IPR001245 GO:0004672|GO:0006468
Seca4g05946 107 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 7 99 - -
Seca4g05946 107 Gene3D Phosphorylase Kinase; domain 1 6 99 - -
Seca4g05946 107 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05946 Seca-Chr4 115088032 115088669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05946 3 105 Receptor kinase-like Gene Family AT4G11530 59.615 5.52e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05946 PK_Tyr_Ser-Thr 6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05946 - - gmx:100778155 147.902