Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05943 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACAGCAAGAAACATGAGGTTTGAAAGTGGTGCATCACAGTCTTCTTCTTCTGGCATCACCAACATAGGAAACTTTGCTTGGCAACCTTCAGATATGGCAGAAGACATGAATAAGCCAAGGTCTTCCTCTGTGCTTCACCCTCCAGATTCTTCCACTTCCAATGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCTTCTCAAGCCATGGATTGGAATCAAGCATCTTTATTAAGAGGTGAAAAGGGTACAGAGAACAGTTTCAGGTCTATGTTGCAAGAGAATTTGAGCTCAACAAGAACAAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCAAGTTCAATGGAGATCAGAGAAGCTGTTCTCAACAGAGTCATCAACAAATGAATTCAATAAGCAAGTGAATAGGGGTTTCTCTTTGGATCAAAACCAGTTTAGTCCTCAATATAGCTCTGGGGACAGCACAGTGACAAGCCAAGGTTTGCCTTCTACTTTTCAGATGGATTCCTCCTCAGCTTTATATGGAAACCCTTCAATATTACAAGGACTATTAGGATCTGACAATAATAATCAACCCCACCAACACCACCAAGGTGGTTTTCCATACACAACAACAAGCTATGGATCATTAATAAACTCTAATGAGTTGATGCCTTCTTGGTCTAAAGTTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAACCACCTAATAACCAGTTGCATTTCACCAACAACACACCCTTTTGGAATGCCTCTGAGATCAAAGATGTTAGGTCCAGCTTCTACCCCTCTTTGCAACCCCCATTCTCCCCTCCAAATTTTGATGTACAGTCAAAGAAAGTAATGGTTTTGCAGAATGTATCTGAAGTGAGGGAGTCAGGTGGTGTGGGAAAGAAAAGTGGGAATGAGGCAGCACCTAAAAGGCCTCGTAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTCACTGTTTTAAGCACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCCACAGAGTTCTGGTAAATCTAAGGAAGCTGAGGGTCCAAAGCAGGATCTTAGAAGCAGAGGGCTATGCTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTTGGAGGGAGTTCCAGATGA 1341 0.4303 MADDQFQASGNWWDTARNMRFESGASQSSSSGITNIGNFAWQPSDMAEDMNKPRSSSVLHPPDSSTSNDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSTRTNFQQETGMGLSQVQWRSEKLFSTESSTNEFNKQVNRGFSLDQNQFSPQYSSGDSTVTSQGLPSTFQMDSSSALYGNPSILQGLLGSDNNNQPHQHHQGGFPYTTTSYGSLINSNELMPSWSKVPQFLRASPPKQPPNNQLHFTNNTPFWNASEIKDVRSSFYPSLQPPFSPPNFDVQSKKVMVLQNVSEVRESGGVGKKSGNEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQIPQSSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGSSR. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05943 446 MobiDBLite consensus disorder prediction 306 333 - -
Seca4g05943 446 FunFam Transcription factor bHLH123 family 336 398 - -
Seca4g05943 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Seca4g05943 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 392 IPR036638 GO:0046983
Seca4g05943 446 CDD bHLH_AtbHLH_like 332 383 IPR045239 -
Seca4g05943 446 Gene3D - 336 389 IPR036638 GO:0046983
Seca4g05943 446 SMART finulus 337 381 IPR011598 GO:0046983
Seca4g05943 446 MobiDBLite consensus disorder prediction 391 412 - -
Seca4g05943 446 MobiDBLite consensus disorder prediction 57 76 - -
Seca4g05943 446 MobiDBLite consensus disorder prediction 44 76 - -
Seca4g05943 446 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 427 - -
Seca4g05943 446 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05943 Seca-Chr4 115042724 115046034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05943 93 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.000 3.50e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05943 - - gmx:100778697 691.034