Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05926 ATGGAGTGCCCGTCTAGCGGAGTATGGACTCCATTGGGATCACAATTACCGCTTATACCAGGAAATTGTTTGGAAATTCGCTTTGCAATTTGGTCTCACACCAATACAATGCTATTTTTAACAGAACCCCACACTTTCAAATACAGAGGATTAGAAACTGAAGGGTTTTTACAAGAGTTCCGAGATTTCATAATAACATCCCTTAGCAGCCCACAATTTGGCTCTCTATCTGTCCAACAAGCAACAGATGTGGCCATGTCTGCAATTCAACAAGGGTTCCAGCTTGACCACAACCTTGCTAATGCTAATTATGAATCATTACCCCAATCCCAGGAGTACTTATCTTTACTTTTGGGAGTCAGGCTACCTGAACCTACTTACACACATATCAGAATGGTTCCTGCATCTAAGGAAGCCATAAAAAAGTCACTGAAGAAATTTAAGGTTACTGAACAGAATCAGTGTTGTGCTATCTGCATGGAGGAGTTTCAAATAGGTGTTGATGGTAGTAGGGCACATGAGGGCTACTCAATGCCCTGTTCTCATGTGTTTCATCCAACCTGTATTGTAACATGGTTGAACAAGAGTAATACGTGTCCATTGTGTCGCTACCCTTTGCCAACTGTCACTGAAGAGATGAATGATAAGACTGATACATGA 660 0.4152 MECPSSGVWTPLGSQLPLIPGNCLEIRFAIWSHTNTMLFLTEPHTFKYRGLETEGFLQEFRDFIITSLSSPQFGSLSVQQATDVAMSAIQQGFQLDHNLANANYESLPQSQEYLSLLLGVRLPEPTYTHIRMVPASKEAIKKSLKKFKVTEQNQCCAICMEEFQIGVDGSRAHEGYSMPCSHVFHPTCIVTWLNKSNTCPLCRYPLPTVTEEMNDKTDT. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05926 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 209 IPR013083 -
Seca4g05926 219 CDD RING-H2_PA-TM-RING 155 203 - -
Seca4g05926 219 Pfam Ring finger domain 156 203 IPR001841 -
Seca4g05926 219 SUPERFAMILY RING/U-box 149 211 - -
Seca4g05926 219 ProSiteProfiles Zinc finger RING-type profile. 156 203 IPR001841 -
Seca4g05926 219 SMART ring_2 156 202 IPR001841 -
Seca4g05926 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05926 Seca-Chr4 114385818 114386780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05926 129 208 C3H Transcription Factor Family AT3G14970 42.500 1.11e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05926 - K22378 ccaj:109804929 102.834