Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05922 ATGCATCATCATAGGATGGACTCGCAGCAGCTTTTCCCTTTCAGTGTGACTAGTGCAGGATTACCCTACATGTCATCTTTTCCCTCTATTCCATCCCTACCCAACAGGCAGCTTGGATCCTGGAAAGTTGACTCAGGAAACTCACCTAATTCACCCTTTTCCACTCATTTTGATTCTGATACTCTTTCTGCACTGAGTGATAGCCAGGAGCAACAATTCTCAGGAGAAATCCTCTCTGGTATCAGCCCCTCCTGTAAATCTTCACTGGAAACCAACCATTATGTGCATAGATCAATCTCATCTGTGGAAAGTCTCAAAGAAAGTTTGCAACTGTATTCTGCTAGGAGCTCTTTTCTACAGAATGCAAGTTGCAACCAGAAAATCAGACACGCATTGCTGGAACTAGAAACTGCTCTGATGGCCCCTGATGATGATGAAGTTACCATGCCAAATACTCCATTGGCTGAGAGCACCAGGCCAACTACATCTGGCCAGAGATATAGGTCCTGGAGCCAGGAGCATCAGGGTTCACAATATATTCAAAGTCAGCCATCACCTGTTACCAGCAGCAGGCAGTCAAGTGAAGGTGTACATGTAGAGAAAAGACAAAAGTTGATGGAGGAAGCATCGCTACAAGGGTTCCCATCAAGCGATTTGAAGCAATTGCTCATTGCATGTGCCAGAGCCATGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGAGAAGGCTAGAACTGCTGTGTCTATCAATGGGGAGCCAATCCAGAGGCTTGGTGCATATATGGTAGAAGGGCTTGTTGCAAGGAAAGAAGCATCAGGGAATAGCATCTATCATGCCCTCAAGTGTAGAGAGCCTGAAGGAAAAGACTTACTCTCTTACATGCAATTGCTTTTTGAAATCTGCCCATACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCTGAAGCATGCAGAAATGAGGATCACATACACATCATAGACTTTCAGATTGCTCAGGGAACTCAATGGATGACCCTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGGGCTCCCCATGTGCGGATCACAGGAATTGATGACCCTGTTTCTAAGTATGCTCGTGGGGATGGACTAGAGGTAGTTGGGAAAAGATTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTGGAGTTTCATGGAGTGCCTGTTTTTGCTCCTGAAGTGACAAGAGATATGCTTGATATCAGGCCTGGGGAGGTGTTGGCTGTGAATTTCCCTTTGCAGCTACATCACACAGCTGATGAGAGTGTTGATATGAGTAACCCAAGGGATGGACTTTTGAGATTGGTGAAGTCTCTTTCACCCAAGATGGTCACACTGGTGGAGCAGGAATCAAACACAAACACAACTCCTTTCTTCAACAGGTTCATAGAAACCTTGGATTACTACTTGGCAATCTTTGAATCCATTGATGTCACGCTCTCAAGAAATAGCAAGGAGCGGATTAATGTGGAGCAACATTGTCTGGCCCGGGATATTGTGAATGTTATTGCTTGTGAAGGCAAACAAAGGGTAGAGCGGCATGAACTGTTTGGCAAGTGGAAGTCAAGGTTAACAATGGCTGGCTTCCGTCAATGTCCTTTAAGCTCTTATGTGAATTCTGTGATAAGAAGCCTTCTGAGGTGCTATTCAGAACACTATACACTTGTGGAGAAGGATGGAGCCATGCTATTGGGGTGGAAGAACAGAAACTTGATATCAGCTTCAGCCTGGCACTGA 1770 0.4497 MHHHRMDSQQLFPFSVTSAGLPYMSSFPSIPSLPNRQLGSWKVDSGNSPNSPFSTHFDSDTLSALSDSQEQQFSGEILSGISPSCKSSLETNHYVHRSISSVESLKESLQLYSARSSFLQNASCNQKIRHALLELETALMAPDDDEVTMPNTPLAESTRPTTSGQRYRSWSQEHQGSQYIQSQPSPVTSSRQSSEGVHVEKRQKLMEEASLQGFPSSDLKQLLIACARAMSENNMKDFDQLIEKARTAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALKCREPEGKDLLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPEVTRDMLDIRPGEVLAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKMVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERINVEQHCLARDIVNVIACEGKQRVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05922 589 ProSiteProfiles GRAS family profile. 210 589 IPR005202 -
Seca4g05922 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 199 585 IPR005202 -
Seca4g05922 589 MobiDBLite consensus disorder prediction 151 194 - -
Seca4g05922 589 MobiDBLite consensus disorder prediction 144 201 - -
Seca4g05922 589 Pfam GRAS domain family 219 588 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05922 Seca-Chr4 114294719 114298467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05922 210 588 GRAS Transcription Factor Family AT1G50600 60.950 5.32e-173 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g05922 GRAS 1.1e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05922 - - adu:107462432 964.911