Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05919 ATGAAAGGAGGGGAGTCAATAGGACTAATCATTGGGATTTCCATAGGTGTTGTAATTGGAGTTGTTTTGGCAATTTCTGCATTGTTCTGTGTTAGATACCATAGGAAGCGTTCACAGATAGGCAATAGCAGTTCCCGGAGGGCAGCAACCATACCTATCCGTGCAAATGGTGCTGATTCATGTACTATTCTATCAGACTCAACCTTAGGTCCAGATTCACCTGTAAGGTCTGGACGTAATGGCATGTCCTTCTGGCTTGATGGCTTCAAGAAGAGTAACATGGTTTCAGCATCTGGAATACCAGAATATTCATACAAGGACTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAGGTTCTTGCAACTAATTCTAAACAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGCTGGGGAGGTTACACCATAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTATATAGGGAAGAGAATGGGGCATTGAGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGTCTTTCAAGAGAAGAGATGGTGGATAAACAGGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAACTTGCAGCAATGAACACTGAGGGAAAAGTTGGTTGGGAAGAGATTGTTGATTCCCGGCTTGAGGGGAAATGTGATTTCCAAGAGCTAAATGAAGTGGCAGCTCTTGCCTACAAATGCATCAACCGTGCACCAAGGAAGCGCCTTTCTATGAGGGACATAGTGCAAGTGTTGACAAGGATCCTTAAAACAAGGCACAATAGGAACCATCATCACAAAAAGTCCCTTTCAGCCACAGCAGATGAAGTTTCCATAGATATTGATCAGCCAGAAACCAAGACTAATGTTGCTGATCACAGAAGAGAAGAATCTATAGATAGTGCAGCTGACATGTATGATTTGTAG 1296 0.4306 MKGGESIGLIIGISIGVVIGVVLAISALFCVRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPDSPVRSGRNGMSFWLDGFKKSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYREENGALSWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRAPRKRLSMRDIVQVLTRILKTRHNRNHHHKKSLSATADEVSIDIDQPETKTNVADHRREESIDSAADMYDL. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05919 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
Seca4g05919 431 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 87 188 - -
Seca4g05919 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05919 431 CDD STKc_IRAK 119 378 - -
Seca4g05919 431 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05919 431 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Seca4g05919 431 PANTHER OS01G0750732 PROTEIN 4 392 - -
Seca4g05919 431 SUPERFAMILY Protein kinase-like (PK-like) 102 391 IPR011009 -
Seca4g05919 431 Gene3D Phosphorylase Kinase; domain 1 87 188 - -
Seca4g05919 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Seca4g05919 431 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05919 Seca-Chr4 114107994 114112661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05919 25 375 Glycoside Hydrolase AT3G07070 38.919 9.95e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca4g05919 PK_Tyr_Ser-Thr 5.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05919 - - gmx:100799586 763.066