Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05915 ATGCCAACTGTGTGGTTCTCTTTGAAGAGGTCTCTACACTGCAAATCAGAGCCATCAGATGTTCATGTTCCAAAATCAAGGAAGCACTTGAGCACAATCTTGACTAAAAGGGCAGGGACAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCACCTAGAGAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAATCCAATAACCCATGAAGTGATTTTGAGTAACTCAAGGTGTGAGCTGAAAATTACTGGGTATGGAGGATTCCAAGAAGGGGTTGGCAGTGATGGTGGAGGTGGTACTAATTGTGGTGATTCAACCTTTGTGGGAACTTTAAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCATTACTTCAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAAGGGTCTGGCTTGCATGGTGCTGGACTTCATTCAAGTAATAGGCTGTCTCTTGAGACAGATTCTAATGGATCTTCTACTATAACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCCGGACAAGCTGGTTGAAGTCTGAAAACCAATGTGGGAGAATTGAGAGAGTTTTGAAAGTCCATAACATGCAAAAGACTCTGGCTAGGTTTGAAGAGTACAGGGAGATGGTGAAAATCAAAGCTAGCAAACTCCCCAAGAAGCATCCTAGGTGCCTTGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCACCACTGTTGCTTGCTCTCTTGGTCTCAATGGTTCTTCCAGCCTGTGCCTATCTGAAAAATGTTGTGTTTGTAGAATCATCAGAAATGGTTTTTCTGCCAAGGAGGAACTCAAGGGTGGAATAGGTGTTTTCACTACTTCCACAAGTGGAAGAGCTTTTGAATCTCTTGAGATTTTTGACCATGACCCATCATTAAGAAAAGCACTAATAGTCTGCAGAGTCATTGCTGGCAGGGTCCATAGACCACTGGAGAACATTCAGGAAATGGCAGGTCAGACAGGGTTTGATTCATTGGCTGGCAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTCCCTTGCTTTGTGGTAATTTGCAAACCCTGA 1281 0.4411 MPTVWFSLKRSLHCKSEPSDVHVPKSRKHLSTILTKRAGTGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSDGGGGTNCGDSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEGSGLHGAGLHSSNRLSLETDSNGSSTITCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKEELKGGIGVFTTSTSGRAFESLEIFDHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05915 426 FunFam C2H2-like zinc finger protein 216 425 - -
Seca4g05915 426 SUPERFAMILY ADP-ribosylation 217 425 - -
Seca4g05915 426 Gene3D - 207 425 - -
Seca4g05915 426 MobiDBLite consensus disorder prediction 128 185 - -
Seca4g05915 426 ProSitePatterns Zinc finger C2H2 type domain signature. 194 215 IPR013087 -
Seca4g05915 426 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 424 - -
Seca4g05915 426 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05915 Seca-Chr4 114060386 114062950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05915 1 426 C2H2 Transcription Factor Family AT5G54630 68.683 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g05915 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05915 - - gmx:100787790 758.829