Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05898 ATGGCTTGCAACAGCATTCAAAGCAGTTCTTCATCTCAGATGATATGTAAATATGATGTGTTTGTAAGCTTCAGAGGTAAAGACACTAGCAACAATTTCACCGATCAGCTCTTTGGTGCCCTCAAAAGAAAAGGGATCGTTACTTTCAGGGACAACACAAAACTCAGGAGAGGCGAATTCATAGCAGCTGAGCTCCAACAAGCAATTGAAGGGTCTCGGATTTTGATTGTGGTATTCTCAAAGAACTATGCTTCCTCAACATGGTGCTTGAGAGAACTGGTAAAGATCCTCGATTGTCTTCAAGTCTCAGGAAAACGTGTCCTGCCTATTTTCTACGATGTTGATCCATCTGAGGTGCGAAAACAGAGTGGGGATTATGAGAAAGCATTTGCTGAACATGAGGAAAGATTCAAAGAGGATTTAGAGAAGATGGTGGAAATGCAGAGATGGAGAGAAGCTCTGACACAAGTGGCCAATCTCTCTGGTTGGGATATTCGGAATAAGCCACAATATACAGAAATTGAAAAAATTGTTGAAGAGGTATTAGCTACATTGAGTCATACACTTTCGAGTCTTCCAAATGATCTAGTGGGGATGCATTCTCCTATTGAAGAGTTAGAAAAACTTTTACATTTTGGCCTGGTTGATGATGTTCGTGTTGTAGCAATTTTTGGGATGGGTGGAATTGGGAAGACAACTCTTGCTATTGTTTTATATGACAAAATCTCTCGAAACTTTGATGCTTGCTATTTTATTGATGATGTAAGCAAAATATATAGAGATTATGGTCCAATTGAAGCACAAAAGCAACTTCTTTGTCAAACCCTAAAGGAAGAAAACCTTCATCTATGCAATCTGTATACTGCAACTAATTTGATACGGAGTAGGCTATGCCATCTAAGGTCCCTTATAATTCTTGATAATGTTGATCAAGTTGAACAACTAGAGAAATTAGCTCTGAATCGTGAATGCTTAGGTGCAGGGAGTAGAATCATCATAATTTCTAGAGATGAGCATATCCTAAAAGAGTATGGAGTGGATGTAGTTTACAAAGTTCAACTCTTAAATGGTGCTAATTCTCTTCCATTATTTTGTAGAAAAGCTTTCAGATGTGATGATATTATGAGATATTACAAAGAGTTTATGTATGATGTACTAAAATATGCTAACGGCCTACCACTAGCAATTAAAGTATTGGGTTCATTTTTGTTTGGTCGAGATGTCTCTGAGTGGAGAAGTGCATTGGGTAGATTGAGAGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGATTAAGTTTTGATGGACTGGAGGAAATGGAAAAAGAAATATTTCTAGATATTGCCTGTTTCTTCAACAGTTATACAGAGAAATATGTGAAGAAAGTTCTAAATTCTTGTGGATTTCATTCTAACATTGGAATGAGAGTTCTCATTGATAAATCACTTCTAACCATTTCAAATGGTCACATTGAAATGCATGATTTGTTGCAAGAGATGGGCAGAAAAATTGTTCGAGAAAATTCACCCAAAGATCAAAGAAAATGGAGTAGGCTTTGGCTCTACAAAGATTTCTACAATGTTATGTTGGCGAATAAGGAAGCAGAAAACATTGAAGGCATAGTTTTGCACCATGCAACAGATGGGAAAGTATTGATGGCTGAAGCATTAACAAAAATGAGTCGCCTTAGATTGCTCATATTCCATTATTTGAACTTTTCAGGAAGCTTCAATTTTCTTTCCAATGAATTAAGATATGTTGAGTGGCATGGATATCCTTTCATGTATTTGCCATCAAGTTTTCAGCCAAATGGACTTGTTAAATTGATCTTGAGGCATAGCTGCATCAAACAACTATGGGAAAGCAAGAAGTATCTGCCCAGCCTGAGAACTCTGGATCTTAGCCACTCCAAAAATCTTATTAAGATGCCAGATTTTAGAGAGGTCCCAAATCTTGAGGAGCTGATTCTTGAAGGATGTATTAAACTTGTGCAGATTGATCCATCCATTGGTCTTCTAAAAAAGCTTACTCTCTTGAATTTGAAAGACTGCAAAAATCTAGGTAGTATACCCAAAAACATATTGGGACTCATTTCTCATGAACATCTAAATCTCTCCAGCCATTCAAAAGTGTTTAATAACCAGCTAATAGATAAACAAAGGCATGTGGATCATTTGAAGAAGCTTGATATAAGTGAAACTGCTACACACTCCCAATCAACACCCTCCATCTTTAAATGGCTTAAGTTACCTTTCAATTTCTTCTTTTCCCGATCACAAAAAGATTCAGCTAGTTGTTTGTTGACTTCCTTGCCTAGCTTCTCTTGTTTGCGTGATCTTGATCTCAGTTTCTGCAATCTACACCAAATCCCTGATGCTATTGGAAGTTTACATAGTTTAGAAACCTTAAATTTATTGGGAAATAAGTTTGATAGACTGACTAGTAACCTCAAGGAGCTTTCCAAACTTGTATACTTAAACTTGCAGCACTGCAAACAGTTGAAAATTTTGCCTGAGCTCCCTTCATGTACTTACATGCCAGAGAGAAGAGAATTTCCTTGGCCTATATCAAGACCAGGATTGTATATTTTCAACTGCCAAAAATTGGGTGAGAGGGAACACAGCAATAGCCTGACATTTTCATGGATGATGCAAGTCCTTCAGGCAAATCAAGAATCCTTTGCCCCCTTTGATGAGATTGAAATTATTATTCCTGGAAGTGAAATACCAAGGTGGTTCAACAATCAGAGTATGGGTAGCTCAATAAGCATTGACCCATCTCCCATTATGCAAGACAATAATTGGATTGGTGTTGCTTACTGTGCAGTATTTGTGGCAACTGATGATCAAACTACTACAAGGAATGAATGGGAACCCTATATATGGATAGGTTTTTCAAATACAGGGCGTGGGATAATTGCCAAAATTCCGGTACTTCCTGATAGAGATCTGGTCATGGTTGAATCAGATCACATGTGGCTATTCTATTTCTCTCGGAAAGGGTTCCTTCATTTTATAAGTCGTATAACTGGCAAAACAAGTGAATTGCATGATCTTAATGGCATAGGATTGGCAACTGTTATCTGTGACAGCCAAGGTTTGCATTTGGAGGTGAAGAATTGTGGGTATCGTTGGGTTTTTAAACAAGATCTAGAACTATTAAAATTAACAATGATCCATAGTGGAAATTCATCAGCTTGGAACCACAAGTTTTTGGCAATTGATGATCAAGCACATCCATAA 3243 0.3743 MACNSIQSSSSSQMICKYDVFVSFRGKDTSNNFTDQLFGALKRKGIVTFRDNTKLRRGEFIAAELQQAIEGSRILIVVFSKNYASSTWCLRELVKILDCLQVSGKRVLPIFYDVDPSEVRKQSGDYEKAFAEHEERFKEDLEKMVEMQRWREALTQVANLSGWDIRNKPQYTEIEKIVEEVLATLSHTLSSLPNDLVGMHSPIEELEKLLHFGLVDDVRVVAIFGMGGIGKTTLAIVLYDKISRNFDACYFIDDVSKIYRDYGPIEAQKQLLCQTLKEENLHLCNLYTATNLIRSRLCHLRSLIILDNVDQVEQLEKLALNRECLGAGSRIIIISRDEHILKEYGVDVVYKVQLLNGANSLPLFCRKAFRCDDIMRYYKEFMYDVLKYANGLPLAIKVLGSFLFGRDVSEWRSALGRLRENPSKDIMDVLRLSFDGLEEMEKEIFLDIACFFNSYTEKYVKKVLNSCGFHSNIGMRVLIDKSLLTISNGHIEMHDLLQEMGRKIVRENSPKDQRKWSRLWLYKDFYNVMLANKEAENIEGIVLHHATDGKVLMAEALTKMSRLRLLIFHYLNFSGSFNFLSNELRYVEWHGYPFMYLPSSFQPNGLVKLILRHSCIKQLWESKKYLPSLRTLDLSHSKNLIKMPDFREVPNLEELILEGCIKLVQIDPSIGLLKKLTLLNLKDCKNLGSIPKNILGLISHEHLNLSSHSKVFNNQLIDKQRHVDHLKKLDISETATHSQSTPSIFKWLKLPFNFFFSRSQKDSASCLLTSLPSFSCLRDLDLSFCNLHQIPDAIGSLHSLETLNLLGNKFDRLTSNLKELSKLVYLNLQHCKQLKILPELPSCTYMPERREFPWPISRPGLYIFNCQKLGEREHSNSLTFSWMMQVLQANQESFAPFDEIEIIIPGSEIPRWFNNQSMGSSISIDPSPIMQDNNWIGVAYCAVFVATDDQTTTRNEWEPYIWIGFSNTGRGIIAKIPVLPDRDLVMVESDHMWLFYFSRKGFLHFISRITGKTSELHDLNGIGLATVICDSQGLHLEVKNCGYRWVFKQDLELLKLTMIHSGNSSAWNHKFLAIDDQAHP. 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05898 1080 Pfam C-JID domain 904 1052 IPR045344 -
Seca4g05898 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Seca4g05898 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 448 IPR027417 -
Seca4g05898 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 730 IPR044974 GO:0006952
Seca4g05898 1080 Gene3D Ribonuclease Inhibitor 536 718 IPR032675 -
Seca4g05898 1080 Gene3D - 355 438 IPR042197 -
Seca4g05898 1080 Coils Coil 803 823 - -
Seca4g05898 1080 Gene3D Ribonuclease Inhibitor 719 852 IPR032675 -
Seca4g05898 1080 SMART till_3 17 160 IPR000157 GO:0007165
Seca4g05898 1080 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Seca4g05898 1080 PRINTS Disease resistance protein signature 624 640 - -
Seca4g05898 1080 PRINTS Disease resistance protein signature 220 235 - -
Seca4g05898 1080 PRINTS Disease resistance protein signature 389 403 - -
Seca4g05898 1080 PRINTS Disease resistance protein signature 296 310 - -
Seca4g05898 1080 SUPERFAMILY L domain-like 493 846 - -
Seca4g05898 1080 Gene3D - 10 184 IPR035897 -
Seca4g05898 1080 Pfam NB-ARC domain 215 424 IPR002182 GO:0043531
Seca4g05898 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Seca4g05898 1080 Pfam TIR domain 17 191 IPR000157 GO:0007165
Seca4g05898 1080 Gene3D - 185 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05898 Seca-Chr4 113395512 113399447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05898 18 847 WRKY Transcription Factor Family AT4G12020 30.913 1.80e-87 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05898 - - gmx:100820213 1296.18