Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05894 ATGGTGGGAACTCCGATTAACGGAAGAACAAGGCCAGCTTTTGGTGTTGTAAATGGTGGGGTGCACGATCTTGGCCCTAGTAGTACTCCACCAAGCAATGCTGGGTCTGATTATGGAATTATAGAGTTCACAAGAGAGGATGTGGAGGCCTTGCTGGGTGAGAAATCCAAAAGGAAGGACAGATTTAATTATAAGGAAAGATGTGAAAACATGATTGATTATATAAAAAGGCTTAAGGTTTGCATCAGATGGTTCCAAGACCTTGAGTTAAGCTACTCATTAGAGCAAGAAAGGTTAAAGAATTCATTGGAATTAGCCCAGCAGAAATGCATGGAAATAGAGTTGCTACTCAAAATCAAGGAAGAAGAACTAAATTCAATTATTGCGGAAATGAGAAGGAATTGCACTTCTTTGCAAGAAAAATTAATAAAGGAAGAATCAGAAAAAACGGCGGCGATGGAGTCTCTTGTTAAAGAGAAAGAAGCCAGGCTTAACATTGAGAGGTCACAGACTACACTATCAGAAGATCTTGGGAGATCTCAACGAGAGCTCCAAAGTGCAAATCAGAAGATATCATCACTCAATGACATGTATAAGCGTCTACAAGATTACATAACAAGCTTGCAGCAGTACAATGGAAAACTTCATTCAGAGCTTTCTACAGCTGAAGAGGAACTTAAGCGCGTAGAGAAAGAGAAGGCTACTGTAGTGGAGAACCTTACCATGTTAAAGGGCCAACTTGCTTTGTCTATGTCTTCTCAAGAAGAGGCAACAAAACAGAAGGATGCTTTGGTTAGTGAGGCTGCATCTCTTCGATTAGAATTGAAACAAGTGAGGGATGACCGGGACCGCCAATTATCTCAAGTGCAAACTTTAACTTCTGAATTACTGAAGACTAAAGATTCTACAGAAAAGTCCTCCTCTGAACTGAACAACATGGCTATAAAAATAAATGAACTAGAGGCAAAATGTGCTTTGCAAGGTGACCGGATTAAGGCATTACAAGAGCAGCTAACAATTGCAGATGAGAAACTGCAGGTTTCTGATATATCTGCAATTGAGACAAGAACAGAATTTGAAGGGCAACAAAAACTTGTAAATGAGTTACAAAGACGCTTGGCAGATGCAGAATATAAAGTTATAGAAGGAGAGAAGCTGAGGAAAGAATTACATAATACCATTTTGGAACTTAAAGGAAACATCCGTGTGTTCTGTCGAGTGCGGCCTTTGTTACCTGATGAAGGTAGCAGCACAGAAGGCAAGATTGTATCTTATCCTACATCGATGGAAGCTTCTGGACGAGGCATTGAATTGGCCCAAAATGTAGGCCAAAAACATTCTTTTACGTTTGATAAAGTTTTTGCCCCTGATGCATCACAAGAACAAGTTTTTACAGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTTGCCTATGGTCAGACAGGATCAGGAAAAACCTATACAATGATGGGCAGGCCTGGACATCCAGAAGAAAAGGGTTTGATACCTCGTTCACTAGAACAAATATTTCAAACAAGACAGTCTCAGCAACCCCAAGGCTGGAAATATGAAATGCAGGTATCAATGTTGGAAATATACAATGAAACCATTCGGGATCTGTTATCTACAAACAAGTCACCATCAGAAGCAACGCGTGCAGAAAATGGTACTCCTGGAAAGCAATACACAATCAAACATGACGCCAGTGGAAATACACACGTTTCTGATCTTACAGTAGTGGATGTTCAGAGTGTAAAAGAAGTTGCATTTCTTTTAAACCAAGCTGCAAATAGCAGATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCAAGAAGTCATTTTGTATTCACTCTTCGAATATCTGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGCATTCTAAATCTTATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAAACTCAAGCAATAAATAAAAGTCTTTCATCATTAAGTGATGTCATATTTGCTTTGGCCAAGAAGGAGGATCATGTCCCATTCAGAAATTCAAAGCTTACATATCTACTTCAGCCTTGTCTAGGTGGAGATTCAAAGACACTAATGTTTGTAAACATATCTCCTGACCATGCTTCAGCAGGTGAGTCACTATGCTCACTGAGGTTTGCATCAAGAGTAAATGCTTGTGAAATTGGGACACCTCGGCGTCACACCAACAGTCGTCCTACAGAATCTCGCTTGAGCTATTTCTAA 2289 0.4006 MVGTPINGRTRPAFGVVNGGVHDLGPSSTPPSNAGSDYGIIEFTREDVEALLGEKSKRKDRFNYKERCENMIDYIKRLKVCIRWFQDLELSYSLEQERLKNSLELAQQKCMEIELLLKIKEEELNSIIAEMRRNCTSLQEKLIKEESEKTAAMESLVKEKEARLNIERSQTTLSEDLGRSQRELQSANQKISSLNDMYKRLQDYITSLQQYNGKLHSELSTAEEELKRVEKEKATVVENLTMLKGQLALSMSSQEEATKQKDALVSEAASLRLELKQVRDDRDRQLSQVQTLTSELLKTKDSTEKSSSELNNMAIKINELEAKCALQGDRIKALQEQLTIADEKLQVSDISAIETRTEFEGQQKLVNELQRRLADAEYKVIEGEKLRKELHNTILELKGNIRVFCRVRPLLPDEGSSTEGKIVSYPTSMEASGRGIELAQNVGQKHSFTFDKVFAPDASQEQVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTRQSQQPQGWKYEMQVSMLEIYNETIRDLLSTNKSPSEATRAENGTPGKQYTIKHDASGNTHVSDLTVVDVQSVKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRISGVNESTDQQVQGILNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDHASAGESLCSLRFASRVNACEIGTPRRHTNSRPTESRLSYF. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05894 762 Coils Coil 177 204 - -
Seca4g05894 762 PANTHER KINESIN-LIKE PROTEIN KLP-3 262 751 IPR027640 GO:0003777|GO:0007018
Seca4g05894 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 739 IPR027417 -
Seca4g05894 762 CDD KISc_C_terminal 398 743 - -
Seca4g05894 762 Coils Coil 96 163 - -
Seca4g05894 762 ProSiteProfiles Kinesin motor domain profile. 400 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 Coils Coil 303 337 - -
Seca4g05894 762 Gene3D Kinesin motor domain 344 743 IPR036961 -
Seca4g05894 762 FunFam Kinesin-like protein 346 743 - -
Seca4g05894 762 Coils Coil 254 295 - -
Seca4g05894 762 Coils Coil 359 386 - -
Seca4g05894 762 PRINTS Kinesin heavy chain signature 691 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 PRINTS Kinesin heavy chain signature 477 498 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 PRINTS Kinesin heavy chain signature 611 628 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 PRINTS Kinesin heavy chain signature 642 660 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 Coils Coil 212 246 - -
Seca4g05894 762 MobiDBLite consensus disorder prediction 550 574 - -
Seca4g05894 762 SMART kinesin_4 398 749 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g05894 762 Pfam Kinesin motor domain 406 739 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05894 Seca-Chr4 113376935 113382681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05894 372 753 Calmodulin-binding Proteins AT5G65930 39.529 7.68e-81 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05894 K10405 - gmx:100814696 1317.75