Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05890 ATGATACTATCTGCTCCTAGTGTTGAAATTGATGGCTCCCTGGGGGATTCTGATGGTCTCAAAGATCCTGGTGTGAAGAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAATGACAAGTTTGTCGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTATTCTTATTGATGCTGTCCGAATGGTGACACAGTTGAGGGGTGAAGCCGAGAAGTTGAAAGACTCAAATATAAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAATGCCCAAGCTCAACCTGGTTTCTTGCCACCACCTCCTGCAATTCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAGTTGGTCCCTTTTATTAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCTGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 597 0.4757 MILSAPSVEIDGSLGDSDGLKDPGVKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAEKLKDSNISLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKSMNAQAQPGFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05890 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
Seca4g05890 198 MobiDBLite consensus disorder prediction 1 42 - -
Seca4g05890 198 Pfam Helix-loop-helix DNA-binding domain 39 86 IPR011598 GO:0046983
Seca4g05890 198 MobiDBLite consensus disorder prediction 127 156 - -
Seca4g05890 198 FunFam Transcription factor bHLH34 26 84 - -
Seca4g05890 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 106 IPR036638 GO:0046983
Seca4g05890 198 Coils Coil 83 138 - -
Seca4g05890 198 Gene3D - 27 84 IPR036638 GO:0046983
Seca4g05890 198 CDD bHLH_AtILR3_like 40 115 - -
Seca4g05890 198 Gene3D arf6 gtpase in complex with a specific effector, jip4 85 140 - -
Seca4g05890 198 PANTHER BHLH TRANSCRIPTION FACTOR 7 198 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca4g05890 198 SMART finulus 41 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05890 Seca-Chr4 113203402 113205306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05890 2 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 77.778 1.89e-108 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g05890 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05890 - - ccaj:109815088 305.064