Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05863 ATGTCTGAATTAGACGCAGAGATCCCTACTACCTTCGATCCTTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGTCAAAGGAATACGTGCATATTCGTATACAGCAGCGAAATGGTAGGAAAAGTTTGACAACAGTCCAAGGATTGAAGAAAGAATTCAGCTATAACAAGATACTTAAAGACCTTAAGAAAGAGTTCTGTTGCAATGGCACAGTTGTTCAGGACCCAGAACTAGGACAGGTCTGTGTTGACATCCTTTTATTAGACATCCTTTTGTTAGACGATCATCTCTACGACCCCTTGTTGCTTCAAATAACATTTTTGTGTGTAGGTTATTCAACTTCAAGGTGA 354 0.4096 MSELDAEIPTTFDPFAEANAEDSGAGSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVCVDILLLDILLLDDHLYDPLLLQITFLCVGYSTSR. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05863 117 Pfam Translation initiation factor SUI1 28 81 IPR001950 GO:0003743|GO:0006413
Seca4g05863 117 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g05863 117 Gene3D - 2 85 - -
Seca4g05863 117 CDD eIF1_SUI1 29 82 IPR005874 GO:0003743
Seca4g05863 117 SUPERFAMILY eIF1-like 5 81 IPR036877 GO:0003743|GO:0006413
Seca4g05863 117 FunFam Eukaryotic translation initiation factor SUI1 2 86 - -
Seca4g05863 117 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 81 IPR001950 GO:0003743|GO:0006413
Seca4g05863 117 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05863 Seca-Chr4 112432411 112435886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05863 1 82 Eukaryotic Initiation Factors Gene Family AT4G27130 87.805 3.05e-52 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05863 K03113 - jre:108983673 166.007