LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05861	TTTGTTAAAAGAATCATTAGACCATGTATTCCTGCCCAACCCCCTTTTCGTGAGAAGCTTGCGTCGTTCCTTTCCTTTAGGGTTTTTATTCCTTTGATTGAACTTCAAAATTTTGTTGTCATTGTTGTTGGTGTTTTGTTGCCGTTGTTAAGGAATTGTTACCAAAGATTGCATTGTGTCTCAGATTGGTTGCGTGTGGCTTCAGTAGTGTGTGGAGGATTTAGAAAGATTTTTGACCTAACTGCTGATCAATTTCGCTGCCTTGAGTTTGGCAGTGAAGAAGAAGCCTATCATTATTATAAGTTATATGCAAAATTTCATGGATTTGTGGTTAGAAAAGATGATGTAACAAAGGATATTAGGGGTAATATTATTATGCGTCAGTTTGTTTGCAATAGGGAGGGTTTAAGGAAGAAGAAGCACCTTATGAGGGTGGATAGGAAGAGAGAGCATAGGCCACTTACCCGTACAAACTGCCAAGCTAAGCTTCGTATACACTACGATTACAAGATTTTTAAATGGATAGTTGTGTCCTTTGAGGAGTGTCATAACCATGAACTTACCCCATCAAGATATGTTCACTTACATTCTGCTTATCGTAGTTTGACAGATGGGGATAAGGCCCAGGTTGACATTTTGCATGCATATGGTGTTAGAAGTTGTCACATCATGGGGTACCTAGTAGCTCAGAAAGGGGGATATGGTCGAGTTGGTTTTACAAAGAAGGACATGTACAATTATCTTGACCGTAAAAATCAAGCAAAGATTAAGAAAGGGGATATATTGGATGACATTCGCAAACTTACTCTAAAGTATGAGACTTTAGGGGATGGGGTTAGCACAGATTGTAATCCTACAGGTTTGAAAATCAGTGATCCTACTGTTGTGAAAACTAAAGGAGCTCCTAGGAAAAAAAAGCTCAGGAAGAAAAGAAATAGACATTGTTCCAATTGCTCTAGCAGTGCACATACAATTAGGAGGTGTCCTACTGTTATTCGGAAAAGTGTCAAAAGATCGAATAATGATGAGCTACAACCTTCTGAAAGTAGTGACAACAGTGCAGAAAGCAAAAGTGAGAAAGATCCAAGGGCCTCTGTTGAAACTAATGGATGTGAAACCAATCCTCAGTCTGACTGCAGATTGAAAAATAAAGGTAAAGAAAAAGAGAGTTTTGGTGCTAAAAAGAAGTCCAAAAAGGTCAAAGAAGAAGAGAAACAAAATCAGCATAAGGAGAAAATCACTCCAGGTGGTTGTTCAAGTGTAGCTAGGCCTGAAATTTCTCAAGGGCTGGCTTTTTTCCCCCCATTGCACATTACTTCAGTTAGTTATGACAACTACAGTCAAGGTTGTTCAATAGTACCTAATGCTACGAGTCATCATATTCAATGTCAAAATCCCCCAATTCCAGTTTACACTCAGAATACCCAGATTCCGGTTTTCCACCCAAATTTACAAGTGCCAAACTTTGCTCAAGTTCCTCAGTATTTTTCTGGAGTATGGAATACTGCAAATAATGCCACCCCTTGGCATAATTTGCTGCAGCAAGTTATGAATGGTGGGGGTAATCTGAATGGAAAGGATGCCCCTCGTTAA	1593	0.3917	FVKRIIRPCIPAQPPFREKLASFLSFRVFIPLIELQNFVVIVVGVLLPLLRNCYQRLHCVSDWLRVASVVCGGFRKIFDLTADQFRCLEFGSEEEAYHYYKLYAKFHGFVVRKDDVTKDIRGNIIMRQFVCNREGLRKKKHLMRVDRKREHRPLTRTNCQAKLRIHYDYKIFKWIVVSFEECHNHELTPSRYVHLHSAYRSLTDGDKAQVDILHAYGVRSCHIMGYLVAQKGGYGRVGFTKKDMYNYLDRKNQAKIKKGDILDDIRKLTLKYETLGDGVSTDCNPTGLKISDPTVVKTKGAPRKKKLRKKRNRHCSNCSSSAHTIRRCPTVIRKSVKRSNNDELQPSESSDNSAESKSEKDPRASVETNGCETNPQSDCRLKNKGKEKESFGAKKKSKKVKEEEKQNQHKEKITPGGCSSVARPEISQGLAFFPPLHITSVSYDNYSQGCSIVPNATSHHIQCQNPPIPVYTQNTQIPVFHPNLQVPNFAQVPQYFSGVWNTANNATPWHNLLQQVMNGGGNLNGKDAPR.	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05861	530	MobiDBLite	consensus disorder prediction	297	420	-	-
	Seca4g05861	530	PANTHER	OS01G0519700 PROTEIN	88	262	-	-
	Seca4g05861	530	MobiDBLite	consensus disorder prediction	379	411	-	-
	Seca4g05861	530	Coils	Coil	393	413	-	-
	Seca4g05861	530	MobiDBLite	consensus disorder prediction	300	316	-	-
	Seca4g05861	530	Pfam	FAR1 DNA-binding domain	99	188	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05861	Seca-Chr4	112403530	112407737	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca4g05861		FAR1	4.1e-20	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05861	-		-	ccaj:109792835	271.166