Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05843 ATGCCCCGAGCAAGTGACCTTCTTTTTGGAGTCTCAATCTTTGCTGAAGCAAAAAAGGCTAAAATCATTGATTTTGCACATTCAGCCTTTGATGAGTTGTTGAAGATAGGAGTTGTAGGGAAACCTTTATGGCATTCCCAGGTAGACTATGGATTTGAGATTCTAAATGAAATTGAATACTTGAGACAATTTGGTCAGGTTGATACAACACTAAGGGAGATTATGAAGTTAGTTGAGGTTAATGACCCTCAAACATTGCCAAGCTTTGACTCATTTGTAACTCAGTACCCAACATCAGAGCCAGCTCATGAAGCAGCTATGGGGATTGAAGCTTCACGTGAAACTGCATTTGTTAACATGAGTCCAATCAGCCTTGTTGAATTACTTATGGATGTGAATCAATGGTCGAGAGTATTTCACAAACTTGTATCAAGAGCAACAGTTTTGGCAACCTTTTTAGAGGGAGTGGAAGGAAGCTGTGATGGGAAATTGCATGTGATGAACGCAGAATTTCATTTGCCTACAGCTCTTGTACGAAGTCGTGAGTGTTATTTTGCAAGGTACTGCAAGCAGTTGTCTCATGACAAGTGGGTGGTTGCTGATGTGTCGTTAGAGAAGTTTTTTCCTTCTCCATCAAACAATTTTCGGAAAAGACCATCTGGCTGTTTGATTACAGGGATGCCTAATGGATTCTCTAAGGTTGTATGGATCGAGCATGTGGAAGCAGATCATAGCCAACTGAGTGAAAATTTCAAGCCACTAGTCACCTCTTGTTTGGCTTTTGGTGCACCGCGTTGGATTGCTTCCTTAGTTCGGCACAGTAAATGGTTTGAAAGTCTGAGTGCTCCAACAGCTTATGCAGATCAAGGGGTTCGTATACCTCAGAGTGGGTGGACAAGTTTCTTGAAACTGGCAGATAGAATGATGAGAACCTTTTGTGTCAATGTGAGTGCTACTACGGACAATCCATGGAGGAGAATAGCTTCTTTTGCTGTGCTACAGATGTGA 1008 0.4187 MPRASDLLFGVSIFAEAKKAKIIDFAHSAFDELLKIGVVGKPLWHSQVDYGFEILNEIEYLRQFGQVDTTLREIMKLVEVNDPQTLPSFDSFVTQYPTSEPAHEAAMGIEASRETAFVNMSPISLVELLMDVNQWSRVFHKLVSRATVLATFLEGVEGSCDGKLHVMNAEFHLPTALVRSRECYFARYCKQLSHDKWVVADVSLEKFFPSPSNNFRKRPSGCLITGMPNGFSKVVWIEHVEADHSQLSENFKPLVTSCLAFGAPRWIASLVRHSKWFESLSAPTAYADQGVRIPQSGWTSFLKLADRMMRTFCVNVSATTDNPWRRIASFAVLQM. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05843 335 Pfam START domain 106 274 IPR002913 GO:0008289
Seca4g05843 335 Gene3D - 98 270 IPR023393 -
Seca4g05843 335 SUPERFAMILY Bet v1-like 23 277 - -
Seca4g05843 335 CDD START_ArGLABRA2_like 19 274 - -
Seca4g05843 335 ProSiteProfiles START domain profile. 15 279 IPR002913 GO:0008289
Seca4g05843 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 328 IPR042160 -
Seca4g05843 335 SMART START_1 66 276 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05843 Seca-Chr4 111896015 111903176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05843 4 329 Homeobox Transcription Factor Family AT4G21750 41.590 3.94e-75 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05843 K09338 - gmx:102662817 320.857