Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05828 ATGTTCCTCTCCCGAAGATCATTGCCCTTGCGACCGTTTTGGGCCCTGCTGGGCCGTAGGCAACGAGCTTGTCAGCCCAATTTTGATCTGAGCCCAATAGGTCATGAAGGTGCACCTTCTTCTTCCATGGATTGCAATAACATCCCAAGCTATAGATATGATGTATTTATCAGTTTCAGAGGACTTGACACTCGCAATAATTTTGTTGATCATATTTACAATCCTCTCATCAGAAAAGGTATTTTCACCTATAAGGATGACCAAAGGCTTGAGAAAGGAGAATCCATTTCACCACAGCTTCTACAGGCAATTAAAAGTTCACGGAATGGGGAATCCGAAGAAGCCTTCATTTCACACAAACAGAAATTCAAACAAGATCCAAACAAGGTTGACCGATGGAAGAGGGCTATGACAGACTTGGGTAATTTGGTTGGATGGGATGTACAATATAAGCAAGAGTTTGAAGAGATTGAAAAAATTGTTCAGAAGGTAATAAAAACACTAGATCATAAATTCTCAGAGTTTGCTGGTGATCTAGTTGGGATACAACCTCGTGTAAAGGAATTAGAAAAGTTTCTAAATTTGGGCTATGGTAATCATAATTTTCAAGTTTTGGGAATTTGGGGCATGGGTGGAATAGGAAAGACAACTCTTGCAACTGTCTTGTATGACAGAATCTCATATCAGTTTGACACTTGCTGTTTTATTGAGAATGTAAGCAAAATCTATAAAGATGGTGGTGGAGCTTTTGTTGTGCAGAAACAAGTTCTTCATCAAACTCTAGACGAAAAAAATCTAGAGACATACAGTCCTTCTGATATATCAAGAATTTTAAGTAAAAGGCTACAAAACATAAAGGTCCTTGTAGTTCTTGACAATATTGATCAAGTTGAGCAACTGCAGGAATTGCATATAAATCGCAAATCACTTGGAAAAGGAAGTATAATAATAATAATAACTACCAGAGATGAGCATATTCTTAGAGAGTATGGAGTAGGTATAGTTTACAAGGTTCTACTTATGAATGATAATGAGGCTCGTGAACTTCTGTGTAGAAAAGCCTTTAAAAGTGTTGACTCAAGCAGCAGTTTTGCAGAGTTAATTCCTGAGGTACTAAAATATGCTCAAGGCCTTCCATTAGCAATTAGAGTATTGGGTTCTTATTTGTGTGCTCGAAATCCAACACAGTGGAGTGCTGCCTTGAACCGACTTAGGAATAATCCAGACAACAAAATTATGGAGGTGCTACAAATAAGTTTTGAAGGATTACATTCAGAGGATAAAGAAATATTTTTGCATATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGATTATGTCAAGCGAATTCTAGATTGTTGTGGATTAAACCCTAATATTGGAATTACACTTCTCATCGAAAAATCCCTCATAACCATTAGAAATCAAGAAATTCATATGCATGAAATGTTACAAGAACTAGGGAAGCAAATTGTTAAGGAACAATGTACCGACAAGCCAGAATGCTGGAGTAGATTATGGCTATACCAAGACTTCTATCATGTGATGATGAGATCAACGGAATCACACAATGTTAAAGCCATAGTTCTAGACCAAAAGGAGGATGGCTTCAAATTCAATAAGTTAAAAGCCGAAGAATTATCAAAATTTGGGGGCCTTAGATTGCTCATATTATATCATAAAAACTTTTCAGGAAGCCCCAAATTTCTTTCTAATTTTCTTCATTATCTTTCATGGAATGGTTACCCTTTCAATTCTTTGCCATCAAATTTTCATCCATATAACATTGCTGAATTGAATATGCCAAACAGTAACATCGAACGACTCTGGGAAGATGTCAAGCATCTACCTAATTTGAAAAGGATGGATTTGAGTAACTCCATAATTCTCAAGGAGACTCCAAGTTTTGAAATGATCCAAAATCTTGAGCGGCTAGATCTTACAGGCTGCACAAACTTATCACAGGTCCATCCATCAATAGGACTTCTTACAAAACTTGTTTTCTTGAGTTTACAAAACTGTAGCAGTCTGGTCAGCCTCAGTTTTAGTAGTTCATCAAATTTAAGTACTTTGAGAGTTTTACGTCTCTCTGGTTGCTCAAAACTTGAAAAGATGCCAGATTTTACCAGGGCACCAAATCTTGAGTACCTTGATATGGACCAATGTACAGCTTTATCCAAAGTTCATAAATCTATTGGGACTCTTACAAAGCTTAGATTTTTGAGTTTGAGAGATTGCACAAATCTTTTTGGAATATCCCACAACATTAATACTATGACATCTCTTGTAACTCTCGATCTATATGGCTGCTTGAAACTTATGAATCTACCTCTGGGAAGGACTTTCAATAACTCTTCCTATTTGGAATCTTTGACTATTTTGGACATGAGCTTTTGCAGTCTTCTTGAAGTACCTGATGCTATTGGAGATTTAAGTTGTCTAGAAAGACTAAATCTACAGGGAAACAACTTTGTTTCATTACCTTCTAGCATCAAGTGGCTTTATAGTCTAGCATATTTAAACTTGGCTCATTGCCATGGGCTTCAATCTTTACCAGAGCTACCATTTGCTAGTGCTTCAACAGTGGGAGGATATTTTAAAATGGCATCTGGATCTCGTGATCATAGGTCAGGATTATATATTTTCGACTGCCCCACGGTGACTCATAAATACATTACAACTTACTACTGTCAATGGCTAATGAGACTAATTAAGGAACCCCGTCACTTCCGATGTGGCTTTGACATTATTGTTCCTTTGGATTCAGAAAATATAACTTCTCCACAAGATTGTCCTATTTCATGGTGGTTCTATCATAAATTTGATGGGGGTTCAGTAATAAGGATGGTGGACTCTGATATGGATGACAACTGGATTGGTTTTGCCTTTTGTGTAGTGTTTGAGTTAGACAATCCTCCTACAACTTCTAGTTCTCCACATCATTTGCTCTCCTTGCCATTGCCACATCCTTTTTATTTTTCTTTTGAAAGTGAACACACAGAAGAGCGCTTTGATATGCCACTTAATTTGGAACAGAACAAGATTGATGGCTCAAAACATCTTTGGGTAATCTATATCTCTCGGGAACACTGCCATTTTGTTAAAACAGGAGCACATATCACATTTAAAGCTGGCCCAGGATTGATGATAACAAGATGGGGATTACGCATACTAATCAAGAGCACAAAGGCAATAAGAAAGGCAAATCAACAAGTTTCTGATGATGAGGATGACCAATCCTTCTATGATTACACAACATGTGATGATGCACACTCGCTTGAGTTTGATCATGTTAATAAAATGATCTGTAGCTCTGAAACTAAAATTCAGCTTCCCTACAATTGGTTGATTACAGAGGAAGAGGAAATCGAGAATTTTGAAGCCAAGTTAAAAGAAAATAATCTTTCAAATCAGGGCTTTTAG 3420 0.3711 MFLSRRSLPLRPFWALLGRRQRACQPNFDLSPIGHEGAPSSSMDCNNIPSYRYDVFISFRGLDTRNNFVDHIYNPLIRKGIFTYKDDQRLEKGESISPQLLQAIKSSRNGESEEAFISHKQKFKQDPNKVDRWKRAMTDLGNLVGWDVQYKQEFEEIEKIVQKVIKTLDHKFSEFAGDLVGIQPRVKELEKFLNLGYGNHNFQVLGIWGMGGIGKTTLATVLYDRISYQFDTCCFIENVSKIYKDGGGAFVVQKQVLHQTLDEKNLETYSPSDISRILSKRLQNIKVLVVLDNIDQVEQLQELHINRKSLGKGSIIIIITTRDEHILREYGVGIVYKVLLMNDNEARELLCRKAFKSVDSSSSFAELIPEVLKYAQGLPLAIRVLGSYLCARNPTQWSAALNRLRNNPDNKIMEVLQISFEGLHSEDKEIFLHIACFFKGEREDYVKRILDCCGLNPNIGITLLIEKSLITIRNQEIHMHEMLQELGKQIVKEQCTDKPECWSRLWLYQDFYHVMMRSTESHNVKAIVLDQKEDGFKFNKLKAEELSKFGGLRLLILYHKNFSGSPKFLSNFLHYLSWNGYPFNSLPSNFHPYNIAELNMPNSNIERLWEDVKHLPNLKRMDLSNSIILKETPSFEMIQNLERLDLTGCTNLSQVHPSIGLLTKLVFLSLQNCSSLVSLSFSSSSNLSTLRVLRLSGCSKLEKMPDFTRAPNLEYLDMDQCTALSKVHKSIGTLTKLRFLSLRDCTNLFGISHNINTMTSLVTLDLYGCLKLMNLPLGRTFNNSSYLESLTILDMSFCSLLEVPDAIGDLSCLERLNLQGNNFVSLPSSIKWLYSLAYLNLAHCHGLQSLPELPFASASTVGGYFKMASGSRDHRSGLYIFDCPTVTHKYITTYYCQWLMRLIKEPRHFRCGFDIIVPLDSENITSPQDCPISWWFYHKFDGGSVIRMVDSDMDDNWIGFAFCVVFELDNPPTTSSSPHHLLSLPLPHPFYFSFESEHTEERFDMPLNLEQNKIDGSKHLWVIYISREHCHFVKTGAHITFKAGPGLMITRWGLRILIKSTKAIRKANQQVSDDEDDQSFYDYTTCDDAHSLEFDHVNKMICSSETKIQLPYNWLITEEEEIENFEAKLKENNLSNQGF. 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05828 1139 Pfam Leucine Rich Repeat 596 613 IPR011713 -
Seca4g05828 1139 Coils Coil 1115 1135 - -
Seca4g05828 1139 SMART till_3 52 171 IPR000157 GO:0007165
Seca4g05828 1139 ProSiteProfiles TIR domain profile. 51 168 IPR000157 GO:0007165
Seca4g05828 1139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 53 703 IPR044974 GO:0006952
Seca4g05828 1139 Gene3D - 152 332 IPR027417 -
Seca4g05828 1139 Gene3D - 340 424 IPR042197 -
Seca4g05828 1139 PRINTS Disease resistance protein signature 204 219 - -
Seca4g05828 1139 PRINTS Disease resistance protein signature 281 295 - -
Seca4g05828 1139 PRINTS Disease resistance protein signature 375 389 - -
Seca4g05828 1139 PRINTS Disease resistance protein signature 685 701 - -
Seca4g05828 1139 Gene3D Ribonuclease Inhibitor 780 865 IPR032675 -
Seca4g05828 1139 SUPERFAMILY "Winged helix" DNA-binding domain 410 514 IPR036390 -
Seca4g05828 1139 Gene3D - 47 110 IPR035897 -
Seca4g05828 1139 Pfam TIR domain 53 108 IPR000157 GO:0007165
Seca4g05828 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 434 IPR027417 -
Seca4g05828 1139 SUPERFAMILY L domain-like 544 855 - -
Seca4g05828 1139 Gene3D Ribonuclease Inhibitor 520 707 IPR032675 -
Seca4g05828 1139 Gene3D Ribonuclease Inhibitor 708 779 IPR032675 -
Seca4g05828 1139 Pfam NB-ARC domain 199 420 IPR002182 GO:0043531
Seca4g05828 1139 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 146 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05828 Seca-Chr4 111618717 111623975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05828 682 852 WRKY Transcription Factor Family AT4G12020 34.302 1.97e-15 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05828 - - var:108332841 1191.79